Gene Pput_2751 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2751 
SymboldapF 
ID5194418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3127298 
End bp3128104 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content54% 
IMG OID640587203 
Productdiaminopimelate epimerase 
Protein accessionYP_001268069 
Protein GI148547967 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0253] Diaminopimelate epimerase 
TIGRFAM ID[TIGR00652] diaminopimelate epimerase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTCG TAAAATATCA CGCGGCTGGC AACGACTATC TCGTCTACCA CGACAAAACG 
CCATTCGATT GCTCTATGCT GGCCATCTCG GTGATATGCG ACCGGCATAG AGGGTTAGGC
AGTGACGGCA TCCTGATTCC TGTAATCGAG CCAGGCAAGA TGCTCTCAGT GCAGATTCTC
AATACCGATG GCTCCGAGGC GGAAAAGAGT GGCAATGGAT TGCGAATCCT ATGTCGCTAC
CTTTGGGATC AGCGCATCGT TTCGCACGAA CCCTTCGAGT TGTTAACCAA AGGCGGTAAG
GTTCGTTGCC AGGTACTTGA CGACGGCCGA CGCATTTCCA TTGCCATGGG TATGGCGACA
TTCCCCGAGA ACGAACGACA CTCAATGGAA GTCGATGGCA TGCGCCTGCA CCTGAACCTT
GTGTCGATGG GCAACCCCCA TTGCGTGGTG TTTGTCGATC AGACGACTGA GGCACTTGCA
CGCAAGCTTG GGCCAACCAT TGAGCAATTG TCGCTCTTCC CAAACAGAAC CAACGTGCAA
TTCGTGAACG TTGTCGATCG CCGAAACCTG ATGGTGCAGA TCTGGGAGCG TGGCGTGGGC
TACACCCTAT CTTCAGGCAC CAGCAGCTGT GCCGCTGCGG CAGTCTCACG ACGACTTGGG
TTCGTTGACG ATCATGTGAC AGTGCACATG CCTGGCGGTC AGATCACCAT CGAACTTGAT
GAGGACAACC ACGTACTCAT GAAGGGCCCG GTGTGCAAAA TTGGGAAGTA CTGGTTGGAT
CCGGAGTGTC TGGCACAGAT TGGTTGA
 
Protein sequence
MQFVKYHAAG NDYLVYHDKT PFDCSMLAIS VICDRHRGLG SDGILIPVIE PGKMLSVQIL 
NTDGSEAEKS GNGLRILCRY LWDQRIVSHE PFELLTKGGK VRCQVLDDGR RISIAMGMAT
FPENERHSME VDGMRLHLNL VSMGNPHCVV FVDQTTEALA RKLGPTIEQL SLFPNRTNVQ
FVNVVDRRNL MVQIWERGVG YTLSSGTSSC AAAAVSRRLG FVDDHVTVHM PGGQITIELD
EDNHVLMKGP VCKIGKYWLD PECLAQIG