Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2751 |
Symbol | dapF |
ID | 5194418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 3127298 |
End bp | 3128104 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640587203 |
Product | diaminopimelate epimerase |
Protein accession | YP_001268069 |
Protein GI | 148547967 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGTTCG TAAAATATCA CGCGGCTGGC AACGACTATC TCGTCTACCA CGACAAAACG CCATTCGATT GCTCTATGCT GGCCATCTCG GTGATATGCG ACCGGCATAG AGGGTTAGGC AGTGACGGCA TCCTGATTCC TGTAATCGAG CCAGGCAAGA TGCTCTCAGT GCAGATTCTC AATACCGATG GCTCCGAGGC GGAAAAGAGT GGCAATGGAT TGCGAATCCT ATGTCGCTAC CTTTGGGATC AGCGCATCGT TTCGCACGAA CCCTTCGAGT TGTTAACCAA AGGCGGTAAG GTTCGTTGCC AGGTACTTGA CGACGGCCGA CGCATTTCCA TTGCCATGGG TATGGCGACA TTCCCCGAGA ACGAACGACA CTCAATGGAA GTCGATGGCA TGCGCCTGCA CCTGAACCTT GTGTCGATGG GCAACCCCCA TTGCGTGGTG TTTGTCGATC AGACGACTGA GGCACTTGCA CGCAAGCTTG GGCCAACCAT TGAGCAATTG TCGCTCTTCC CAAACAGAAC CAACGTGCAA TTCGTGAACG TTGTCGATCG CCGAAACCTG ATGGTGCAGA TCTGGGAGCG TGGCGTGGGC TACACCCTAT CTTCAGGCAC CAGCAGCTGT GCCGCTGCGG CAGTCTCACG ACGACTTGGG TTCGTTGACG ATCATGTGAC AGTGCACATG CCTGGCGGTC AGATCACCAT CGAACTTGAT GAGGACAACC ACGTACTCAT GAAGGGCCCG GTGTGCAAAA TTGGGAAGTA CTGGTTGGAT CCGGAGTGTC TGGCACAGAT TGGTTGA
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Protein sequence | MQFVKYHAAG NDYLVYHDKT PFDCSMLAIS VICDRHRGLG SDGILIPVIE PGKMLSVQIL NTDGSEAEKS GNGLRILCRY LWDQRIVSHE PFELLTKGGK VRCQVLDDGR RISIAMGMAT FPENERHSME VDGMRLHLNL VSMGNPHCVV FVDQTTEALA RKLGPTIEQL SLFPNRTNVQ FVNVVDRRNL MVQIWERGVG YTLSSGTSSC AAAAVSRRLG FVDDHVTVHM PGGQITIELD EDNHVLMKGP VCKIGKYWLD PECLAQIG
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