| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2692 |
|---|
| Symbol | |
|---|
| ID | 5193898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3068495 |
|---|
| End bp | 3069727 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640587144 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001268010 |
|---|
| Protein GI | 148547908 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.514064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG CATTGCCATT GGCGGGTATC CGCGTCATTG ACTACAGCCA CTTCCTCGCC
GGCCCCTATG TCGGCCGTTG CCTGGCGGCG CTCGGCGCAG AGGTGATCAA GGTCGAGCGG
CCGGGTAGCG GCGACGCTGG CCGCCAGCAT GCGTTCACCC TGGACGACCA GCAGAGCGGC
TATTTCCTGC AGCTGAACAT GGGCAAGCAG GGCGTCAGCG TCAACATGAA GGACCCGCGC
GGCAAGGCGT TCATGCAGCG CCTGACCGAT TCGGCCGACG TGTTCATCGA GAACTACCGC
CCCGGCGCCC TGGACAAGCT GGGCCTGGGC TACGCCGAGC TGTCGGCGCG CAACCCGCGC
CTGGTGTACT GCTCGATTTC CGCCTACGGC CATACCGGGC CGGACGCCCA CCGCGCCGGC
TTCGGCCTGA TCGCCGAGGC CAAGAGCGGG ATCATGCAGA TGGTGGGCGT GCCGGGCGAG
GCACCGCCGC TGCTGCGTAT TTCCCTGGGC GACATGTACA CCGGCATCCA CGCGGTGGCG
GCGATCAATG CCGCGCTGCT CGGCCGGGTG AGCAGTGGCC GAGGCCAGCA CATCGACATG
GCGCTGTACG ACACCCTGGT GTCGATGCAC GAATACGCGG TGCAGTGTTA CACGCTGTCC
GGTGGCACTG TGTTGCCCCA GCAGACCGGC CACGACATGC CCACTTCGAC CCTGTACGGC
GTGTTCCGCG CCACCGACGG CGACCTGGTG ATCGCCGCCC AGGTCGACGA TGCCTGGCAG
CGCTTCGCGG CCATGCTCGA AGCTAACGGC GGCCCGCCCG GGTTCGGCAG CGACCGCCGC
TACCACAGCC TCAACGGCCG CAATGCCCAC CGCGAGGCGA TCCTGAGGGT GGTCCGCGAC
TGGGTTGGCG CGCGTCGGGT GGCCGAGATC CTCGCGTTGC TCGATGGCAT CGACATCCCC
AGTGCCAAGG TTCAACGCAT CGACGAAGTG CTGGCCGACC CGCAGATCCA GGCACGCAAC
ATGGTCATTG AGCAGCAGCA CCCACGCTAC GGCACGCTGC GCCTGGCCAA CCTGCCGTTC
CGCTTTTCCG ACTGCGACAC CACGATTCAC CAAGTAGCCC CGGACCTTGG CCAGCACAAC
GCCGAAGTGG CCGCCGGGCT TGGCTTCAGC ACTGAAGAAA TCACAGCCCT GCAGGCGGAT
GGCGTGTTGT TTACCCACGG AGATGCACGA TGA
|
|---|
| Protein sequence | MSQALPLAGI RVIDYSHFLA GPYVGRCLAA LGAEVIKVER PGSGDAGRQH AFTLDDQQSG
YFLQLNMGKQ GVSVNMKDPR GKAFMQRLTD SADVFIENYR PGALDKLGLG YAELSARNPR
LVYCSISAYG HTGPDAHRAG FGLIAEAKSG IMQMVGVPGE APPLLRISLG DMYTGIHAVA
AINAALLGRV SSGRGQHIDM ALYDTLVSMH EYAVQCYTLS GGTVLPQQTG HDMPTSTLYG
VFRATDGDLV IAAQVDDAWQ RFAAMLEANG GPPGFGSDRR YHSLNGRNAH REAILRVVRD
WVGARRVAEI LALLDGIDIP SAKVQRIDEV LADPQIQARN MVIEQQHPRY GTLRLANLPF
RFSDCDTTIH QVAPDLGQHN AEVAAGLGFS TEEITALQAD GVLFTHGDAR
|
|---|
| |