| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2613 |
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| Symbol | |
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| ID | 5190291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2978320 |
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| End bp | 2980920 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640587066 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001267932 |
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| Protein GI | 148547830 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.315185 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCGGACG GTAACCGCCT GCAATTCAAG TACGACGAGT TCTCCCGCTT GCTCGAAGAG
ACCGACCCGC TGGGCCGCAA GACCACCTAT GAATATCACC ACCTGACCAC GCTGGTGACC
CAGGTCAGCT ATCCGGATGG CAGCACCTGG CGAGCGCGCT ACGACGACAA GGGCAACCTG
CTCGCCGAAT TCGATGCCCT CGGCCAAATG ACCGAGTACC TGAACAGCGA TGACGGCCTG
CCGCACACCA TCATCGATGC GACCTACAAG TCCAAGTACC TGTGGTGGAA CACCCTGGCC
CAGGTCGAGC GCTACCAGGA CTGCTCGGGC AAGAGCACGT ACTACCGCTA TGACGAACGC
CAGCACCTGG TGGCGGTGAC CGATGCGCTG AACCAGACCA CCACGCTGGA GCGCAAGCCC
GACGGTGAAG TGCTGCGCAT CAGCCACCCG GACGGCACCA CGGAAACCTT CACCTACAAC
GTCTACGGTC AGGTGCTCAG CCACACCGAC GGCAAGGGCC AGACCACCCG CCTGATGCGC
ACGGCCCGTG GCCTGCCGAG CAGCCGCCAG GATGCCAAGG GCCAGCGGGT TCGCTACGAG
TACGACAAGG CCATTCGCCT GACCGCGCTG GTCAACGAAA ACAACGCCAC GTACAGCTTT
GGCTACGACG CTTCGGACCG GCTGAGCGAA GAAGTGCGGG TAGATAACCT GACCCGACGT
TTCAGCTACA ACGTCGGTGG CCATCTCACA CGACTGGATG AGATTGGCTA TGGCGACAAT
GCCGAACGGC CAGAGCGCCA TACGCTGTTC GAGCGTGATG CTATTGGGCG TTTGGTCGCC
AAGATCAACC GTGATGCGAG CCAGACATTC GCATACGACG ACGGTGACCG GTTGCTGAGC
ATCGAGCGGC AACCGAGCGG GATCGGCAAG CAGCTTGGGA TCACGGAAGA AAAGCTTGAG
TATGCCTACG ATCTGCTCGG TCGGCTGACG AAAGAAATCA CCTCCGCCGG AACGCTTGGC
TACGAGTACG ACCCACTCAG CAACCTGACC ACGCTGACCC TGCCGGATGG GCGCAAGGTC
AATCACCTGT ATTACGGCAG TGGCCACCTG CACCAGCTGA ACCTGGATGG TCAGGTGATC
AGCGACATGG AGCGCGATGA CCTGCACCGC GAGGTGTACC GGACCCAGGG CAAGCTCACC
AGTTGCTTCG GTTACGACGC CATGGGGCGC AAGGCCTGGC AGTTTGCCTC GACCTTGCCG
GCCGACAAGC TTTCGCAGGT GCACAACACC GGCATCAATA CCTCGTTGCT GGTCGAGCAC
GCCTACAACC CGATCCACCG CCGTTACCAG TACGACCCGG CCGGTGAACT GGTGCGCACC
CGCGACAAGC TACGCGGCGA GATCAAGTAC GAATACGAAG CCAACGGCCA ATTGCGCAGT
CGCGATACCG GTTCGCTGAT CGGCAGCGAG GAGTTCCGCT ACGACCCGGC AGCCAACCGC
CTGGACTTCA ATGCGCGGCA GTTCGACAAG GTCAAGGACA ACCGCATCAA ACAGTGGCGG
GATCAAGAGT ACCGCTACGA CCCGTGGGGC AACCTGATCG AGAAGCGCTC GGGGCACTGC
AAGCTGCAGC ACTTTATCTA TGACTGCGAG AACCGGCTGG TGCGGGCGGA GACGTTGGTC
AATGGCAAGC TGGATAGCCA AGGCGAGTAC CGGTACGACA GCTTGGGGAG GCGAATAGCC
AAACAGGCGG AAATGAATGG CGAGGTAGAG CAGAAGCGCT TCCTCTGGCA AGGCTTGCGG
ATGCTGCGGG AGGAAACTCC TGGGCACAGC ATCTTGTACC TGTACGAGCC GGGTAGCTAT
GCGCCGTTGG CGCGGGTCGA TCAGGTGGAA GGGGAGGAGC AGAAGGTTTA CTACTTCCAT
ACGGATCAGA TTGGAACCCC GCTTGAGCTG ACGGATAGCA GGGGTGAGAT TGTCTGGCAG
GCGACGTATC GCTCGTGGGG CTCGGTAGAG CAGCTATTAG TGAGTGAGGT GGAGCAGAAT
ATACGATTCC AAGGTCAATA TTTTGATTAT GAATCAGGTC TGCACTACAA TACATTTCGT
TGTTACGATC CAGAAGTTGG CCGATTCGCA ACTCAGGACC CAATCGGGCT AACAGGCGGT
ATCCATCTAT ATCAATATGC CCTGAATCCA AGTGCCTATG TTGACCCGCT CGGGCTTTCA
TTTGGATCCG GAAAGGGAAC ACATAATGCA ATTGCAACTT TGTACGACAG CAGCGGAAAT
GTGAAAGCTA CTGGTATTTG GCAAAGTGGA AATATGACGC CGGATGAGGC AGCATTAGGG
TTTCCAAAGA GCACCCTTGC TACTCATACA GAGGCGCGCA TTACCCGTGA ATTGAGCCCC
CAAGCAGTTC CCGGTGACAG ACTTGTTATT GAGGGTGAAT ATCCGCCGTG CAATAGCTGT
AAAGGTAAGA TGAATGCATT TAAGGGCTCC ACCGGTGCTG ATGTCGAGTA CAGATGGGCG
TCAGGCGATG GCACAACAAC AGAGGTTTGG AATGCAAAAA GTAAGAGAAC ACAAAAAATA
TCTGGCTCTG GGTGTGGTTA A
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| Protein sequence | MPDGNRLQFK YDEFSRLLEE TDPLGRKTTY EYHHLTTLVT QVSYPDGSTW RARYDDKGNL
LAEFDALGQM TEYLNSDDGL PHTIIDATYK SKYLWWNTLA QVERYQDCSG KSTYYRYDER
QHLVAVTDAL NQTTTLERKP DGEVLRISHP DGTTETFTYN VYGQVLSHTD GKGQTTRLMR
TARGLPSSRQ DAKGQRVRYE YDKAIRLTAL VNENNATYSF GYDASDRLSE EVRVDNLTRR
FSYNVGGHLT RLDEIGYGDN AERPERHTLF ERDAIGRLVA KINRDASQTF AYDDGDRLLS
IERQPSGIGK QLGITEEKLE YAYDLLGRLT KEITSAGTLG YEYDPLSNLT TLTLPDGRKV
NHLYYGSGHL HQLNLDGQVI SDMERDDLHR EVYRTQGKLT SCFGYDAMGR KAWQFASTLP
ADKLSQVHNT GINTSLLVEH AYNPIHRRYQ YDPAGELVRT RDKLRGEIKY EYEANGQLRS
RDTGSLIGSE EFRYDPAANR LDFNARQFDK VKDNRIKQWR DQEYRYDPWG NLIEKRSGHC
KLQHFIYDCE NRLVRAETLV NGKLDSQGEY RYDSLGRRIA KQAEMNGEVE QKRFLWQGLR
MLREETPGHS ILYLYEPGSY APLARVDQVE GEEQKVYYFH TDQIGTPLEL TDSRGEIVWQ
ATYRSWGSVE QLLVSEVEQN IRFQGQYFDY ESGLHYNTFR CYDPEVGRFA TQDPIGLTGG
IHLYQYALNP SAYVDPLGLS FGSGKGTHNA IATLYDSSGN VKATGIWQSG NMTPDEAALG
FPKSTLATHT EARITRELSP QAVPGDRLVI EGEYPPCNSC KGKMNAFKGS TGADVEYRWA
SGDGTTTEVW NAKSKRTQKI SGSGCG
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