Gene Pput_2567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2567 
Symbol 
ID5191331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2924288 
End bp2925376 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content62% 
IMG OID640587020 
Productextracellular solute-binding protein 
Protein accessionYP_001267886 
Protein GI148547784 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCATC TGCAAGCCCT GATCCCCGCT GCATTCACCC TGCTGTTCGC CACCACCACC 
CAGGCCGCGC CCACGGTCAG TGTGTACAAC TGGACCGACT ACATCGGTGA CACCACCCTG
GCCGACTTCC AGGCCAGCAG CGGAATCAAG GTGGTCTATG ACGTGTTCGA CTCCAACGAA
ACCCTTGAAG GCAAGCTGTT GGCCGGGCGT ACGGGTTATG ACGTGGTGGT ACCGTCCAAC
CACTTCCTCG CCCGCCAGGC CCAGGCCGGC GCCTTCCTGC CGCTGGACCG CAGCAAGCTG
CCGAACTGGC AGCACCTGGA CCCCAAACTG CTCAAACAAC TTGAACAGAA CGACCCCGGC
AACCAGTACG CCGTGCCTTA CCTGTGGGGC ACCAATGGCA TCGGCTACAA CGTCGACAAG
GTCAAGGCGG CACTGGGTGT GGACCATATC GACTCATGGG CGGTGCTGTT CGAGCCCGAG
AACCTGAAAA AGCTCAAGCA GTGCGGCGTG GCATTCATGG ACTCGCCCGA CGAACTGTTC
CCGGCCGTGC TCAACTACCT GGGCATGGAC CCGCGCAGCG AAAAACCGGG CGACTACGCC
AAGGCCGAGG CACGCCTGCT CGAGCTGCGC CCCTACATCA CCTACTTCCA CTCCTCCAAG
TACGTCTCTG ACCTTGCGAA CGGTGATGTC TGCGTAGCGT TCGGCTACTC CGGCGACGTG
TTCCAGGCCG CCAACCGCGC CGTAGAGGCG AAAAACGGCG TGAAGGTTGC CTACAGCATT
CCCAAGGAAG GCAGCAACCT GTGGTTCGAC CTGCTGGCCA TCCCCAAGGA CGCCAACAAC
CCCGAGCAGG CCCTGGCGTT CATCAACTAC CTGCTCGACC CCAAAGTGAT CGCCAAGGTC
AGCGCCACGG TCGGCTATGC CAACGCCAAC CCGGACGCCA AGGCCTACAT GGATGCATCG
CTGGTGAACA ACCCCGAGAT CTACCCACCC CAGGAGGTGC TGGACAAGCT GTACATCTCC
AGCACCCCGA GCCCGAAAAT CATGCGCGTC ATGACCCGCT CCTGGAGCAA GATCAAGTCC
AACCGCTGA
 
Protein sequence
MRHLQALIPA AFTLLFATTT QAAPTVSVYN WTDYIGDTTL ADFQASSGIK VVYDVFDSNE 
TLEGKLLAGR TGYDVVVPSN HFLARQAQAG AFLPLDRSKL PNWQHLDPKL LKQLEQNDPG
NQYAVPYLWG TNGIGYNVDK VKAALGVDHI DSWAVLFEPE NLKKLKQCGV AFMDSPDELF
PAVLNYLGMD PRSEKPGDYA KAEARLLELR PYITYFHSSK YVSDLANGDV CVAFGYSGDV
FQAANRAVEA KNGVKVAYSI PKEGSNLWFD LLAIPKDANN PEQALAFINY LLDPKVIAKV
SATVGYANAN PDAKAYMDAS LVNNPEIYPP QEVLDKLYIS STPSPKIMRV MTRSWSKIKS
NR