| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2473 |
|---|
| Symbol | |
|---|
| ID | 5192301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 2822820 |
|---|
| End bp | 2823824 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640586926 |
|---|
| Product | PaaX family transcriptional regulator |
|---|
| Protein accession | YP_001267792 |
|---|
| Protein GI | 148547690 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
|---|
| TIGRFAM ID | [TIGR02277] phenylacetic acid degradation operon negative regulatory protein PaaX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.303711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGG CAGCGACACG CAATGGCCAG GCGGCCCACC GCACAGGTAT AGTCGGTGCT
TTATCCGCGC ACAGTTCGCC CATGAGCACT CTTGCCCCAC TGAACCACTT GATCACCCGC
TTTCAGGAAC AGACGCCGAT CCGCGCCAGT TCCCTGATCA TCACGTTGTA CGGCGATGCC
ATCGAGCCGC ACGGCGGTAC AGTCTGGCTC GGTAGCCTGA TCAACCTGCT GGAACCGATC
GGCATCAATG AACGGCTGAT TCGCACGTCG ATCTTTCGCC TGACCAAAGA AGGTTGGCTC
ACTGCAGAAA AGGTGGGTCG ACGCAGTTAT TACAGCCTGA CAGGCACTGG CCGTCGGCGT
TTCGAAAAGG CCTTCAAGCG CGTCTATAGC CCAAGCCAGC CAGCCTGGGA CGGGGCCTGG
ACGCTGGTGT TGCTGTCGCA ACTCGAGGCG GGTAAGCGCA AGGCCGTGCG TGAAGAGCTG
GAGTGGCAGG GGTTTGGTGT CATGGCGCCG AACCTGCTGG GTTGCCCACG GGCAGACCGT
GCCGACCTGG TGGCCACGTT GCGTGACCTT GAGGCCGGCG ACGACAGTAT CGTCTTCGAC
ACCCACACCC AAGAGGTGCT CGCGTCCAAG GCGATGCGCG CCCAGGTGCG GGAAAGCTGG
CGTATCGACG AACTGGGGCA GCAATACAGC GAGTTTATCC AGCTGTTCAG GCCGCTGTGG
CAAGGTTTGA AAGAGCAGCC GTTGCTGGAT GCTCAAGATT GCTTCCTGGC ACGCACGCTG
CTGATTCACG AGTACCGCCG CCTGCTGCTG CGCGACCCGC AACTGCCCGA CGAGCTGCTG
CCAGGGGACT GGGAGGGAAG GGCTGCGCGG CAGTTGTGCC GTAACCTCTA CCGACTGGTG
TTTGCCAAAG CCGAAGAATG GTTGAATGCA GCACTGGAAA CAGCAGATGG CCCATTGCCG
GATGTGAGCG AGAGTTTCTA CAAACGTTTT GGCGGGTTGG CTTGA
|
|---|
| Protein sequence | MSLAATRNGQ AAHRTGIVGA LSAHSSPMST LAPLNHLITR FQEQTPIRAS SLIITLYGDA
IEPHGGTVWL GSLINLLEPI GINERLIRTS IFRLTKEGWL TAEKVGRRSY YSLTGTGRRR
FEKAFKRVYS PSQPAWDGAW TLVLLSQLEA GKRKAVREEL EWQGFGVMAP NLLGCPRADR
ADLVATLRDL EAGDDSIVFD THTQEVLASK AMRAQVRESW RIDELGQQYS EFIQLFRPLW
QGLKEQPLLD AQDCFLARTL LIHEYRRLLL RDPQLPDELL PGDWEGRAAR QLCRNLYRLV
FAKAEEWLNA ALETADGPLP DVSESFYKRF GGLA
|
|---|
| |