Gene Pput_2301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2301 
Symbol 
ID5190527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2616773 
End bp2618683 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content67% 
IMG OID640586758 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_001267624 
Protein GI148547522 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGAC AACTTATAAC AAACGCCCAC GACCCGCTGC ACGAATCCCG CGAGGCCCGC 
CTGAAGCTGG TCAGCGAAGG CGAACTACCG CTGGGCATGC TGCGTGATGA GATCGACGCT
TCCTGGCGCC GCAGCCTGGG CCACGGCCTG GATTGCCTGC AGGGCGAACA GGTCGGCTTG
GGCTTGGAAC AGGGCCATGA CCTGCGCCTG CTGCTGGCGC GCAACCGCCT GTTGATCGAT
GCCGTTACCC CCGAACTCGA CTACCTGGTC GCGCGCCAGG GCAAGGCTGG CATCGTCATC
CTCGGCGATG CCCAGGCCAA CGTGCTGGCC ATCGAAGGCC AGAAGCACGT GCTGCAACGC
GAAGGCCTGC GCGATCTGCA CCCGGGCAGT TGCTGGAGCG AATCGCTGCG CGGCACCAAT
GCCATCGGCA CGGCCGTGGT CGAAGGCCGG CCGACGCTGA TCAACTGCGG CGAACATTAC
CTTGACCGCC TGAGCCCGTT CTCCTGTACT TCCGTGCCAC TGCGCGACCC GCGGGGCGAG
GTGATCGGCG TGCTCGACAT CACCCGCGAA GGGGTGATGG CGCAACCGCA GGACAGCCTG
TCGACCCTGA TGCTGGCGGC CGGCAACATT GAAAGCCGCC TGTTTGGCCT GTGCCACCCG
GACCAGTTGG TGCTGGCCTT CCACAGCCGC CCGCAGTACC TCAACAGTGC CTGGCACGGC
CTGTTGGCCC TGAGCCTGGA CGGCGAAGTG CTGGCTGCCA ACGACAGTGC CTGCCAGCTG
TTGCAGGTGC CGCGTCACGA ACTGATTGGT CGGCGCAGCA CCGACCTGCT GGGCGAACGT
TCCCCGGCCT TTATCGCTCG CCTGTGGCAG GGTGGGGTCA GCAGCGTGCA GACCGCCAAG
GGCGAGTTCT ATTTCCGTGC CCTACAGCTG CCGCGCCATG GCCGGGTAAC CCCCAGCACA
CCATCCAGCA AGCCGGCCTT GAGCAAACAG TCACCTGCAC TCGATGCTCT GGCCGGTGGT
GATCAACGCC TGGCGCGCAA CCTGCGCATG GCTCGCCAGG GGCTGGGCAA TGGTTTGCCA
GTGCTGCTGC TGGGCGAAAC CGGTACCGGC AAGGAAGTGG TCGCTCGCGC CTTGCACCAG
GCCAGCCCGC GTGCCGACAA ACCGTTTGTG GCAGTCAACT GCGCGGCCAT TCCCGAAGGG
CTGATCGAGT CCGAGCTGTT CGGCTACCGT GAGGGCGCCT TCACCGGTTC GCGCCGGGGC
GGCATGGTCG GGCGGCTGAT GCAGGCCCAT GGTGGCACGC TGTTCCTCGA CGAAATCGGC
GACATGCCGC TGGCCCTGCA AGCACGCCTG CTGCGGGTGC TGCAGGAGCG CCGCGTAGCA
CCCTTGGGGG CGGGCGACGA GCAGGACATC GACGTGGCGC TGATCTGCGC CACCCACCGC
GACCTCAAGC GCCTGGTGCA GGAGCAGCAC TTCCGTGAAG ACCTGTTCTA CCGGGTCAAC
GGCGTGTCGC TGCGCCTGCC GGCCCTGCGC GAACGCGACG ACCTGGCGGC GATCATCCAA
GGCCTGCTGG ACAAGGCCGA TGCGCGTGGC GTAACCCTCG ACCCGGCGTT GACCGCGTTG
CTCGAAGGCT TCGACTGGCC AGGCAACATC CGCCAGCTGG AAATGGTGGT GCGCACCGCC
CTCGCCATGC GCGAGGATGG CGAGCAGGTG CTGACACTCG ATCACCTTAC CGACTGCCTG
CTGGACGAAC TCGCCAGCAG CGCAGCGCCC TCCGGCAGCC TCAAGGACAG TGAACTGGAA
CAGATTCGCG GTGCTCTGGC GCGCCACCAG GGCAACGTCT CGGCCGCCGC CGCGGCACTG
GGTATCAGCC GGGCGACGCT GTACCGCAAG CTCAAGCAGT TGCGCGGCTG A
 
Protein sequence
MARQLITNAH DPLHESREAR LKLVSEGELP LGMLRDEIDA SWRRSLGHGL DCLQGEQVGL 
GLEQGHDLRL LLARNRLLID AVTPELDYLV ARQGKAGIVI LGDAQANVLA IEGQKHVLQR
EGLRDLHPGS CWSESLRGTN AIGTAVVEGR PTLINCGEHY LDRLSPFSCT SVPLRDPRGE
VIGVLDITRE GVMAQPQDSL STLMLAAGNI ESRLFGLCHP DQLVLAFHSR PQYLNSAWHG
LLALSLDGEV LAANDSACQL LQVPRHELIG RRSTDLLGER SPAFIARLWQ GGVSSVQTAK
GEFYFRALQL PRHGRVTPST PSSKPALSKQ SPALDALAGG DQRLARNLRM ARQGLGNGLP
VLLLGETGTG KEVVARALHQ ASPRADKPFV AVNCAAIPEG LIESELFGYR EGAFTGSRRG
GMVGRLMQAH GGTLFLDEIG DMPLALQARL LRVLQERRVA PLGAGDEQDI DVALICATHR
DLKRLVQEQH FREDLFYRVN GVSLRLPALR ERDDLAAIIQ GLLDKADARG VTLDPALTAL
LEGFDWPGNI RQLEMVVRTA LAMREDGEQV LTLDHLTDCL LDELASSAAP SGSLKDSELE
QIRGALARHQ GNVSAAAAAL GISRATLYRK LKQLRG