| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2225 |
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| Symbol | |
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| ID | 5192470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 2531295 |
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| End bp | 2532488 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586682 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001267548 |
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| Protein GI | 148547446 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.818643 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACTC CCGCAGACAC CCCGACTCCC TCCGTCTCGC CCGAGCCGTC GCGCAAGCGC
AAGGCTTGGT TGCTTGGCCT GCTGTTGCTG CTGATCCTGG CAGGGGTCGG CACCTGGGCC
TGGTACAGCA TTGTCGGGCG TTGGCACGAA AGCACCGACG ATGCGTATGT CAACGGCAAC
GTGGTGGAGA TCACCCCGCT GGTCGCTGGC ACCGTTATCA GCATCGGGGC CGATGACGGC
GACCTGGTCC ACGCCGGCCA GGTGTTGCTG CAATTCGACC CGGCCGACAG CGAAGTGGCC
TTGCAGTCCG CCGAAGCCAA GCTGGCACGC AGCGTGCGGC AGGTGCGCGG GCTGTACAGC
AACGTCGACT CGCTGAAGGC TCAACTGGAA ACGCGCCAAG CCGAACTGCG CAAGGCGCAG
CAGGACTTCA ACCGGCGCAA GGTGCTGGCT GACAGTGGTG CGATTGCCGC CGAAGAACTG
TCCCATGCCC GCGACGACCT GAGCGTTGCC CAGGCCGCCG TCAACAGCGC GCGGCAACAG
CTCAGCACCA GCAGCGCGCT GGTCGACGAC ACCGTGGTGT CCTCGCATCC CGATGTCATG
GCTGCAGCTG CCGACCTGCG CCAGGCCTAC CTCGACCACG CCCGCACCAC GTTGGTCGCG
CCGGTCACCG GCTACGTCGC CAAGCGTACC GTCCAGTTGG GCCAGCGCCT GCAGCCGGGC
ACCGCGACCA TGGCGGTCAT TCCGCTGGAT CAGGTGTGGA TCGATGCCAA CTTCAAGGAA
ACCCAGCTGC GAGAGATGCG CATCGGCCAG CCGGTGGAAA TCACCGCTGA TGTGTACGGC
AGCGAGGTTA AGTACAGCGG CACGGTCGAC AGCCTTGGGG CGGGCACCGG TAGCGCCTTT
GCCTTGCTGC CGGCGCAGAA CGCAACCGGT AACTGGATCA AGATTGTCCA GCGAGTACCC
GTGCGCATCC ACCTCAGCCC CGACCAGCTC AAGGACCACC CGCTACGTAT CGGCCTGTCC
ACCGTGGTTG AAGTCGACCT GCATGACCAG AGCGGCCCGA CCCTGGCCCA GCAGCCACCG
CAGAAGGCCA GCTACACCAC CCAGGTGTAT GACCACCAGA TGATCGAAGC CGACAACCTG
ATCGCCCGGC TGATTCACGA GAACAGTGCA ACCGGCAAGA CGGCGCAACG ATGA
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| Protein sequence | MATPADTPTP SVSPEPSRKR KAWLLGLLLL LILAGVGTWA WYSIVGRWHE STDDAYVNGN
VVEITPLVAG TVISIGADDG DLVHAGQVLL QFDPADSEVA LQSAEAKLAR SVRQVRGLYS
NVDSLKAQLE TRQAELRKAQ QDFNRRKVLA DSGAIAAEEL SHARDDLSVA QAAVNSARQQ
LSTSSALVDD TVVSSHPDVM AAAADLRQAY LDHARTTLVA PVTGYVAKRT VQLGQRLQPG
TATMAVIPLD QVWIDANFKE TQLREMRIGQ PVEITADVYG SEVKYSGTVD SLGAGTGSAF
ALLPAQNATG NWIKIVQRVP VRIHLSPDQL KDHPLRIGLS TVVEVDLHDQ SGPTLAQQPP
QKASYTTQVY DHQMIEADNL IARLIHENSA TGKTAQR
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