Gene Pput_2130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_2130 
Symbol 
ID5192570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2410709 
End bp2414329 
Gene Length3621 bp 
Protein Length1206 aa 
Translation table11 
GC content61% 
IMG OID640586587 
ProductImcF domain-containing protein 
Protein accessionYP_001267453 
Protein GI148547351 
COG category[S] Function unknown 
COG ID[COG3523] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03348] type VI secretion protein IcmF 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCAAA TATGGACGCA ACTCAAACGT TGGGGCTGGC CGTGGGTAAC GCGCATTGGC 
CTGGCGCTGC CGCTGCTGCT CGGGCTTGGC GCTTTGCTGA TGCTGGTCGC TATCTGGTGG
CTTGGCCCGC AATGGACGTG GCGGGAGCAG CAGCCGCTGG CAAGTGTGGC TCATCGCAGC
GTGGCAAGCC TGGTGCTCGT GCTGGTGCCG CTTCTGTGCT GGCTTGGGGT GCTGCGCACG
CGCTTTCGCC GCCTGCAAGC GGAGCGCCGG CAGGCACTGG CCGCCGAACA GGATGTCGCG
CTACCGTTCG TGCAGGCGCA AGAGCGGGCC TTGAGCCAGG GGCTTGAGCG GTATCTCGAC
AATGCCGGTG GGCGACGCGC GTTGTACCGG CTGCCTTGGT ACCTGGTGTT GGGCGACGAA
CAGGCCGGTA AAAGCAGCTT CATCGACCGC ACCGATCAGC GCTTTACCCT GACGCGTATC
GACCAGGCCC AGGCACGGGG CCGACAGGCT GAAGCACTGG CCTATCCGGT AGGCTGGTGG
GTCAGCGACG ATGCCGTGAT CATCGACCCG CCCGGCGTTT TCATCAGTCA AAAACCACCG
GTGGGCTCGG CGGCCAACGA CCCCACCAAT GCCTCCTCGC CGCCCGGTAT CCAGGCCCGG
TTATGGGAGC ACCTGTTGGG CTGGCTGCAG CGTAAGCGAA GCCAGCGGGC GCTCAATGGT
GTGTTGCTGG TGGTCGACCT GCCGGCGCTG CTGCATGGCA AGCCCGAGCA GCGCGTCGCG
CTGGCCCATG GGTTGCGCAC ACGCCTGTAC GAAGTGAGCA GTCAGTTGGG CGCGCGCCTG
CCGCTGTACG TGGTCCTGAC CAAATTCGAT CTGCTGGACG GCTTCGACCA GTTCTACAGC
CAGCTTCCGG CCGCCAAGCG TGAAAGCCTG TTGGGGTTCA CCTTCAAGCT GGATGCGGTT
GACGCGTTCG ACGCCTGGCT GGATGAGTAT GACGAGCACT ACAGGCGGCT TCTCACTCAA
TTGCATGAGC AGGTCATCGA TCGGCTGGAT GTACTGGGCA AGACAGCACC GTGCGTGCGC
CTGTTCTCAC TGCATGCACA GCTGATCGGG TTGCGCCCCA TACTGCAGGC ATTCTTGCGC
GAAACCCTGG CGAGTGACCG GTTCACCACG CCACCCTTGG TGCGTGGTGT GTACTGGTCG
TCAGTGGTAC AGCAAGGCGA CATGCGCAAT GCCTTTGTCC GTGAAGCGGC TCAGCCCTAC
ACGACGAAGC TACCCCTGCG TGAAGGTAAG GCACAGGGGA AGGCGTTGGT CTATTTCATC
CAGCAAGCAT TCAGGCGGGT TATTTATCAG GAAGCCGGGC TGGCGGGCGA CAATGTTCGG
GTTGCGCGCA GCAAGCGCCA CTTGCTGTGG GTGGGCTCTG GTGTAGGCAT CCTGGCGTTC
AGTATCGCCA TTGCCAGCTG GCAGCGTTAC GCCGAGATCA ATGGCGCCAA GGCTGCCAGT
GTGCTCGCCA AAAGCCAGGA GTACAGTGGT CACGAAGTCG ATATGCGTCT TGATCCGACC
GGGCGCAACC TGCTGGCGCC ACTGGACCAG ATTCGCGATG CGGTGGCGGT GTTTGGCGAC
TATCGTGCGG CCTGGCCGGT GGTTGCCGAT TTTGGCTTGT ATCAAGGGCG CAACATTGGT
CCCTTGGTTG ATGAGGCGTA CCTCAGCTTG TTGTCGAAAC GTTTCTTGCC GGCCTTGGCC
AGTGGTGTGA TCGATGCCAT GAACGCTGCA CCACCTGGCA GTGAGCAACA AATGGCCGCG
CTCAGGGTTT ACCGGATGAT CGAGGACCGC AACAGCCGCC GGCCAGAATG GGTCGAGGGC
TGGATGGCCC GTCAGTGGCA ACGGGCCTTT CCTGGCCAGG GTCAGTTGCA GCGTGACCTC
ATGCAGCACC TGAAGTACGC CTTGGCCTAT GCCGATACCG ATTTGCCGCA ATACCGCCAG
CGGGTCAGCG AAGTGCAGCA GGTGTTGCGC AAATTGCCGT TGCCACAGCG GGTCTACGCA
GGGCTGAAAC AACAATCGTA CGAGCAGGTG CACGCCGGGC TGGACCTGCG CCACCAGGTA
GGGCCTGCGT TCGATGTGGT GTACCAGCCG TCTTCCGGGT CAAGGCAAGG GGGGGAGGAT
GTAAGGCTGG CCGGCATGCT CACCGCCAAA GGCTTCAGGG ATTACTTCGA GCCGCACAGC
CAACGCTTCG CTGAAATGGC GATGGTTGAT CAATGGGCAT TGGGGGAGCG CAGTCAACTC
GACTATTCGG ACGTCGACCG CGATGCGTTG ACCGAGCGGC TGTATAACCT CTACAGCGCC
GATTACATTG ACAGCTGGCG GCGCGCCCTG AACGCGTTTA CGGTGGCTGA CTTCCGTGAT
ATGGACCATG GTGTCGCGAT CCTGGAGCAG TTGACCGGCC CCGCAGCACC GTTGCAACGG
CTGCTGGATA CGGTCAGGGA TAACACCTCG CTTGCGTCTC CAGCAGTTGT TGAATCACCG
GGTGAGCTGA GTACGCTGCG GGTAGCAACC GGAAAACCCG AGCAACCGCA AGCGTTGGCC
ATCCAGCGGG CGTTTGCAGG CCTGGGCGCC ATGCTGCAGG CGACAGGAGA AAAGCCGAGC
TACTACGATG AAACCCTTGG CGCTGTTGCG GCCGTGCTGG ACTACGCCAA GGCCGTACAG
GACAGCCCGG ACCGCGGCAA GGCCGCGTTG CAAGCCGTGC ATCAGCGCTT TGCGATGACA
GGGCAGGACC CGATCGGTAC CCTGCAACGT GTTGCCACAG GTTTACCGGA GCCTATCAGC
CACCAGGTCA GAAAGCTCGC CGACCAGACT GCCCAGGTGC TGAACGTTGA AGCACTGCGC
GAACTGGAGC GACGTTGGGA TGCTGACGTG TACAGTTTTT TCCAGCAACG CCTGGCAGGC
CGCTACCCCT TTGTGGTGAA GGCACCCGAT GCTTCTTTGG ATGACTTCGA GGCGTTCTTC
GGGCCGAAAG GGCGCCTGCA GCAGTTTAAT GATCGGTATC TCAAGGTTTT CCTGAAGGAC
AACCTTGAGG CTTTGCAGTC CGCTCAGCAC GGGCAATCCC TGATTCGTGC CGACGTGATC
GAGCAGCTCG AGCTGGCGGA GCGCATCCGC GAAACCTTCT TCGATCAGCG TGGCCAGCTG
AGTGTGCAGT TCAGCATCGA GCCCTTGGGG CTCAGTGCGA ACCAGCGTAC CAGCCTGCTG
GACCTGGATG GCCAGTTGAT TGCCTACACC CATGGCCCAA GCCATATCAC GGGTATTGTC
TGGCCCAATA CCCTGGGGCA GCAGGTCCGT AGCAATCTCA CCTTGCTAAG GCAAAATGGC
AACAGCAGCA GCCTGGAGTA CCGTGGCCCG TGGTCGATGT TCCGCTTGCT CAGCCGCGGC
GCGCTCAATG GCCGGACGGC GACCAGCGTG GACCTGAGCT TCCGGACCGG AGATGGCGTG
ATGCGCTATC GGCTTAACGC TGAAAAAGCC TTCAATCCCA TTACCCAGCA ACCGTTCAAA
GGCTTCCGCT TGCCCCGAGG CTTATTGCAA CAGCCAGCCA ATGGGGTGCA GGCGGCGCTA
TCGGATGAGC AGCGACTATG A
 
Protein sequence
MNQIWTQLKR WGWPWVTRIG LALPLLLGLG ALLMLVAIWW LGPQWTWREQ QPLASVAHRS 
VASLVLVLVP LLCWLGVLRT RFRRLQAERR QALAAEQDVA LPFVQAQERA LSQGLERYLD
NAGGRRALYR LPWYLVLGDE QAGKSSFIDR TDQRFTLTRI DQAQARGRQA EALAYPVGWW
VSDDAVIIDP PGVFISQKPP VGSAANDPTN ASSPPGIQAR LWEHLLGWLQ RKRSQRALNG
VLLVVDLPAL LHGKPEQRVA LAHGLRTRLY EVSSQLGARL PLYVVLTKFD LLDGFDQFYS
QLPAAKRESL LGFTFKLDAV DAFDAWLDEY DEHYRRLLTQ LHEQVIDRLD VLGKTAPCVR
LFSLHAQLIG LRPILQAFLR ETLASDRFTT PPLVRGVYWS SVVQQGDMRN AFVREAAQPY
TTKLPLREGK AQGKALVYFI QQAFRRVIYQ EAGLAGDNVR VARSKRHLLW VGSGVGILAF
SIAIASWQRY AEINGAKAAS VLAKSQEYSG HEVDMRLDPT GRNLLAPLDQ IRDAVAVFGD
YRAAWPVVAD FGLYQGRNIG PLVDEAYLSL LSKRFLPALA SGVIDAMNAA PPGSEQQMAA
LRVYRMIEDR NSRRPEWVEG WMARQWQRAF PGQGQLQRDL MQHLKYALAY ADTDLPQYRQ
RVSEVQQVLR KLPLPQRVYA GLKQQSYEQV HAGLDLRHQV GPAFDVVYQP SSGSRQGGED
VRLAGMLTAK GFRDYFEPHS QRFAEMAMVD QWALGERSQL DYSDVDRDAL TERLYNLYSA
DYIDSWRRAL NAFTVADFRD MDHGVAILEQ LTGPAAPLQR LLDTVRDNTS LASPAVVESP
GELSTLRVAT GKPEQPQALA IQRAFAGLGA MLQATGEKPS YYDETLGAVA AVLDYAKAVQ
DSPDRGKAAL QAVHQRFAMT GQDPIGTLQR VATGLPEPIS HQVRKLADQT AQVLNVEALR
ELERRWDADV YSFFQQRLAG RYPFVVKAPD ASLDDFEAFF GPKGRLQQFN DRYLKVFLKD
NLEALQSAQH GQSLIRADVI EQLELAERIR ETFFDQRGQL SVQFSIEPLG LSANQRTSLL
DLDGQLIAYT HGPSHITGIV WPNTLGQQVR SNLTLLRQNG NSSSLEYRGP WSMFRLLSRG
ALNGRTATSV DLSFRTGDGV MRYRLNAEKA FNPITQQPFK GFRLPRGLLQ QPANGVQAAL
SDEQRL