Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_2130 |
Symbol | |
ID | 5192570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2410709 |
End bp | 2414329 |
Gene Length | 3621 bp |
Protein Length | 1206 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640586587 |
Product | ImcF domain-containing protein |
Protein accession | YP_001267453 |
Protein GI | 148547351 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCAAA TATGGACGCA ACTCAAACGT TGGGGCTGGC CGTGGGTAAC GCGCATTGGC CTGGCGCTGC CGCTGCTGCT CGGGCTTGGC GCTTTGCTGA TGCTGGTCGC TATCTGGTGG CTTGGCCCGC AATGGACGTG GCGGGAGCAG CAGCCGCTGG CAAGTGTGGC TCATCGCAGC GTGGCAAGCC TGGTGCTCGT GCTGGTGCCG CTTCTGTGCT GGCTTGGGGT GCTGCGCACG CGCTTTCGCC GCCTGCAAGC GGAGCGCCGG CAGGCACTGG CCGCCGAACA GGATGTCGCG CTACCGTTCG TGCAGGCGCA AGAGCGGGCC TTGAGCCAGG GGCTTGAGCG GTATCTCGAC AATGCCGGTG GGCGACGCGC GTTGTACCGG CTGCCTTGGT ACCTGGTGTT GGGCGACGAA CAGGCCGGTA AAAGCAGCTT CATCGACCGC ACCGATCAGC GCTTTACCCT GACGCGTATC GACCAGGCCC AGGCACGGGG CCGACAGGCT GAAGCACTGG CCTATCCGGT AGGCTGGTGG GTCAGCGACG ATGCCGTGAT CATCGACCCG CCCGGCGTTT TCATCAGTCA AAAACCACCG GTGGGCTCGG CGGCCAACGA CCCCACCAAT GCCTCCTCGC CGCCCGGTAT CCAGGCCCGG TTATGGGAGC ACCTGTTGGG CTGGCTGCAG CGTAAGCGAA GCCAGCGGGC GCTCAATGGT GTGTTGCTGG TGGTCGACCT GCCGGCGCTG CTGCATGGCA AGCCCGAGCA GCGCGTCGCG CTGGCCCATG GGTTGCGCAC ACGCCTGTAC GAAGTGAGCA GTCAGTTGGG CGCGCGCCTG CCGCTGTACG TGGTCCTGAC CAAATTCGAT CTGCTGGACG GCTTCGACCA GTTCTACAGC CAGCTTCCGG CCGCCAAGCG TGAAAGCCTG TTGGGGTTCA CCTTCAAGCT GGATGCGGTT GACGCGTTCG ACGCCTGGCT GGATGAGTAT GACGAGCACT ACAGGCGGCT TCTCACTCAA TTGCATGAGC AGGTCATCGA TCGGCTGGAT GTACTGGGCA AGACAGCACC GTGCGTGCGC CTGTTCTCAC TGCATGCACA GCTGATCGGG TTGCGCCCCA TACTGCAGGC ATTCTTGCGC GAAACCCTGG CGAGTGACCG GTTCACCACG CCACCCTTGG TGCGTGGTGT GTACTGGTCG TCAGTGGTAC AGCAAGGCGA CATGCGCAAT GCCTTTGTCC GTGAAGCGGC TCAGCCCTAC ACGACGAAGC TACCCCTGCG TGAAGGTAAG GCACAGGGGA AGGCGTTGGT CTATTTCATC CAGCAAGCAT TCAGGCGGGT TATTTATCAG GAAGCCGGGC TGGCGGGCGA CAATGTTCGG GTTGCGCGCA GCAAGCGCCA CTTGCTGTGG GTGGGCTCTG GTGTAGGCAT CCTGGCGTTC AGTATCGCCA TTGCCAGCTG GCAGCGTTAC GCCGAGATCA ATGGCGCCAA GGCTGCCAGT GTGCTCGCCA AAAGCCAGGA GTACAGTGGT CACGAAGTCG ATATGCGTCT TGATCCGACC GGGCGCAACC TGCTGGCGCC ACTGGACCAG ATTCGCGATG CGGTGGCGGT GTTTGGCGAC TATCGTGCGG CCTGGCCGGT GGTTGCCGAT TTTGGCTTGT ATCAAGGGCG CAACATTGGT CCCTTGGTTG ATGAGGCGTA CCTCAGCTTG TTGTCGAAAC GTTTCTTGCC GGCCTTGGCC AGTGGTGTGA TCGATGCCAT GAACGCTGCA CCACCTGGCA GTGAGCAACA AATGGCCGCG CTCAGGGTTT ACCGGATGAT CGAGGACCGC AACAGCCGCC GGCCAGAATG GGTCGAGGGC TGGATGGCCC GTCAGTGGCA ACGGGCCTTT CCTGGCCAGG GTCAGTTGCA GCGTGACCTC ATGCAGCACC TGAAGTACGC CTTGGCCTAT GCCGATACCG ATTTGCCGCA ATACCGCCAG CGGGTCAGCG AAGTGCAGCA GGTGTTGCGC AAATTGCCGT TGCCACAGCG GGTCTACGCA GGGCTGAAAC AACAATCGTA CGAGCAGGTG CACGCCGGGC TGGACCTGCG CCACCAGGTA GGGCCTGCGT TCGATGTGGT GTACCAGCCG TCTTCCGGGT CAAGGCAAGG GGGGGAGGAT GTAAGGCTGG CCGGCATGCT CACCGCCAAA GGCTTCAGGG ATTACTTCGA GCCGCACAGC CAACGCTTCG CTGAAATGGC GATGGTTGAT CAATGGGCAT TGGGGGAGCG CAGTCAACTC GACTATTCGG ACGTCGACCG CGATGCGTTG ACCGAGCGGC TGTATAACCT CTACAGCGCC GATTACATTG ACAGCTGGCG GCGCGCCCTG AACGCGTTTA CGGTGGCTGA CTTCCGTGAT ATGGACCATG GTGTCGCGAT CCTGGAGCAG TTGACCGGCC CCGCAGCACC GTTGCAACGG CTGCTGGATA CGGTCAGGGA TAACACCTCG CTTGCGTCTC CAGCAGTTGT TGAATCACCG GGTGAGCTGA GTACGCTGCG GGTAGCAACC GGAAAACCCG AGCAACCGCA AGCGTTGGCC ATCCAGCGGG CGTTTGCAGG CCTGGGCGCC ATGCTGCAGG CGACAGGAGA AAAGCCGAGC TACTACGATG AAACCCTTGG CGCTGTTGCG GCCGTGCTGG ACTACGCCAA GGCCGTACAG GACAGCCCGG ACCGCGGCAA GGCCGCGTTG CAAGCCGTGC ATCAGCGCTT TGCGATGACA GGGCAGGACC CGATCGGTAC CCTGCAACGT GTTGCCACAG GTTTACCGGA GCCTATCAGC CACCAGGTCA GAAAGCTCGC CGACCAGACT GCCCAGGTGC TGAACGTTGA AGCACTGCGC GAACTGGAGC GACGTTGGGA TGCTGACGTG TACAGTTTTT TCCAGCAACG CCTGGCAGGC CGCTACCCCT TTGTGGTGAA GGCACCCGAT GCTTCTTTGG ATGACTTCGA GGCGTTCTTC GGGCCGAAAG GGCGCCTGCA GCAGTTTAAT GATCGGTATC TCAAGGTTTT CCTGAAGGAC AACCTTGAGG CTTTGCAGTC CGCTCAGCAC GGGCAATCCC TGATTCGTGC CGACGTGATC GAGCAGCTCG AGCTGGCGGA GCGCATCCGC GAAACCTTCT TCGATCAGCG TGGCCAGCTG AGTGTGCAGT TCAGCATCGA GCCCTTGGGG CTCAGTGCGA ACCAGCGTAC CAGCCTGCTG GACCTGGATG GCCAGTTGAT TGCCTACACC CATGGCCCAA GCCATATCAC GGGTATTGTC TGGCCCAATA CCCTGGGGCA GCAGGTCCGT AGCAATCTCA CCTTGCTAAG GCAAAATGGC AACAGCAGCA GCCTGGAGTA CCGTGGCCCG TGGTCGATGT TCCGCTTGCT CAGCCGCGGC GCGCTCAATG GCCGGACGGC GACCAGCGTG GACCTGAGCT TCCGGACCGG AGATGGCGTG ATGCGCTATC GGCTTAACGC TGAAAAAGCC TTCAATCCCA TTACCCAGCA ACCGTTCAAA GGCTTCCGCT TGCCCCGAGG CTTATTGCAA CAGCCAGCCA ATGGGGTGCA GGCGGCGCTA TCGGATGAGC AGCGACTATG A
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Protein sequence | MNQIWTQLKR WGWPWVTRIG LALPLLLGLG ALLMLVAIWW LGPQWTWREQ QPLASVAHRS VASLVLVLVP LLCWLGVLRT RFRRLQAERR QALAAEQDVA LPFVQAQERA LSQGLERYLD NAGGRRALYR LPWYLVLGDE QAGKSSFIDR TDQRFTLTRI DQAQARGRQA EALAYPVGWW VSDDAVIIDP PGVFISQKPP VGSAANDPTN ASSPPGIQAR LWEHLLGWLQ RKRSQRALNG VLLVVDLPAL LHGKPEQRVA LAHGLRTRLY EVSSQLGARL PLYVVLTKFD LLDGFDQFYS QLPAAKRESL LGFTFKLDAV DAFDAWLDEY DEHYRRLLTQ LHEQVIDRLD VLGKTAPCVR LFSLHAQLIG LRPILQAFLR ETLASDRFTT PPLVRGVYWS SVVQQGDMRN AFVREAAQPY TTKLPLREGK AQGKALVYFI QQAFRRVIYQ EAGLAGDNVR VARSKRHLLW VGSGVGILAF SIAIASWQRY AEINGAKAAS VLAKSQEYSG HEVDMRLDPT GRNLLAPLDQ IRDAVAVFGD YRAAWPVVAD FGLYQGRNIG PLVDEAYLSL LSKRFLPALA SGVIDAMNAA PPGSEQQMAA LRVYRMIEDR NSRRPEWVEG WMARQWQRAF PGQGQLQRDL MQHLKYALAY ADTDLPQYRQ RVSEVQQVLR KLPLPQRVYA GLKQQSYEQV HAGLDLRHQV GPAFDVVYQP SSGSRQGGED VRLAGMLTAK GFRDYFEPHS QRFAEMAMVD QWALGERSQL DYSDVDRDAL TERLYNLYSA DYIDSWRRAL NAFTVADFRD MDHGVAILEQ LTGPAAPLQR LLDTVRDNTS LASPAVVESP GELSTLRVAT GKPEQPQALA IQRAFAGLGA MLQATGEKPS YYDETLGAVA AVLDYAKAVQ DSPDRGKAAL QAVHQRFAMT GQDPIGTLQR VATGLPEPIS HQVRKLADQT AQVLNVEALR ELERRWDADV YSFFQQRLAG RYPFVVKAPD ASLDDFEAFF GPKGRLQQFN DRYLKVFLKD NLEALQSAQH GQSLIRADVI EQLELAERIR ETFFDQRGQL SVQFSIEPLG LSANQRTSLL DLDGQLIAYT HGPSHITGIV WPNTLGQQVR SNLTLLRQNG NSSSLEYRGP WSMFRLLSRG ALNGRTATSV DLSFRTGDGV MRYRLNAEKA FNPITQQPFK GFRLPRGLLQ QPANGVQAAL SDEQRL
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