| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2105 |
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| Symbol | |
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| ID | 5192951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2380751 |
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| End bp | 2382496 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586562 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001267428 |
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| Protein GI | 148547326 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGG AACACATCCC CGAAACACTC GATCTTGGCG TCACAGACCC CTCGAAAACC
GCAGAAGCCC GCCAGGACCG GCATTTCGAG GGCAAGCTTG ACTGGATTGT CTTTGGTTTC
ACCAGCCTTC TGGCCATCGC CTTCGTGCTC TGGGGCTTCC TCAACCAGGT CAGCCTGGCC
AGCAGCGCCT CCAGCGCGCA ATCCTGGGTC ATTCTCAATT TCGGCTGGTT CTTCGTGCTC
ACCTCCTCCC TGTTCGTGGT GTTCGTGCTG TGGTTGGCCG CCAGCCGTTA CGGGCGAGTG
CCGCTGGGCC GTGATGGCGA ACAGCCAGAA TTTCGCACGG TGTCCTGGGT AGCAATGATG
TTCAGCGCCG GTATGGGCAT CGGCCTGATG TTCTTCGGCG TGGCCGAGCC GCTGTCGCAC
TACATTTCGC CGCCGCCCGG CTCGGCCAGC GGGCAGACCA GCGAAGCGAT GCAGGTGGCA
ATGGCCACCA CCTTGTTCCA CTGGACCCTG CACCCTTGGG CCATGTACGC CATCGTCGGC
CTGGTAATCG CCTACGGCAC CTTCCGCCGT GGCCGCTCGC AGCTGATTTC CGCCGCCTTC
CGGCCACTGA TCGGCAAGCA CGCAAACGGC CCTCTCGGCC GCCTGATCGA CATGATGGCA
ATCTTCGCCA CGCTGTTCGG CTCGGCCGCC TCGCTGGGCC TTGGGGCGCT GCAGATTGCC
GGCGGCCTGG AGTACAACGG CTGGATCGAA AGCCCCGGTA AACTGTTCTA CATCTCGATC
ATCACCCTGC TGACCATTGC CTTCGTAACC TCGGCGGTGT CGGGCATCGG CAAGGGTATC
CAGTGGCTGT CCAACACCAA CATGGTGCTG GCACTGGTGC TGGCGGTGTT CGTGTTCATG
GTCGGGCCGA CGCTGCTGAT GCTCAACCTG CTGCCGACCT CGCTCGGCAT CTACATCAAG
ATGCTGCCGG AAATGATGGC CCGCACCAAC GCCAGCGGCG GCGAGCAGAT GAACAGCTGG
CTGGCCGGCT GGACCGTGTT TTACTGGGCC TGGTGGATCT CCTGGACGCC TTTCGTGGGC
ATGTTCATCG CCCGCATCAG CCGCGGGCGC ACCATTCGCC AGTTCGTTAC CGGGGTGCTG
CTGGTGCCAA GCCTGGTCAG CCTGGTGTGG TTCACCATCT TCGGTGGCGC CGCCATCGAG
GCCGTGCGCG AGGGCGCCTT CCAGCTGGCC AACGGGGCGG TCAACAGTAA CCACGCGCTG
TACCAGTTGC TGGACAGCTA CCCGCTGGCC TCGGCAACCT CGGTGCTGGT GATGATCCTG
GTGGGCATCT TTTTTGTTTC GGGCGCCGAC GCCGCTTCGC TGGTGATGGG CACGCTGTCG
GAACACGGCA CCACCGCGCC ATCGCGACGC ACAGTGATTT TCTGGGGGAC GCTGACCGGT
ACGGTGGCGG CGATCATGCT GGCGATCGGC GACCCAGGTA ACCCTGGCGA GGCGCTGACC
GGGTTGCAGA ACCTGACCAT CGTCGTGGCC TTGCCATTCG TGGTGGTGAT GGTGCTGCTA
TGCTTGGCGT TGTACCGCGA CCTGCGCAAG GACCCGATGA TGCTGCGCCA CCTGCGCGGC
AACGAGCTGA TCGAGAAAGC CGTACTGTAT GGGGCTGTGA AGCATGGGGA GGAGTTCTAC
ATTGTGGTGC AGGAGAAGAA GGCATCGGCC AAGACAGCGG CAGAGGCCGA AGTAACCAGC
AACTGA
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| Protein sequence | MAKEHIPETL DLGVTDPSKT AEARQDRHFE GKLDWIVFGF TSLLAIAFVL WGFLNQVSLA
SSASSAQSWV ILNFGWFFVL TSSLFVVFVL WLAASRYGRV PLGRDGEQPE FRTVSWVAMM
FSAGMGIGLM FFGVAEPLSH YISPPPGSAS GQTSEAMQVA MATTLFHWTL HPWAMYAIVG
LVIAYGTFRR GRSQLISAAF RPLIGKHANG PLGRLIDMMA IFATLFGSAA SLGLGALQIA
GGLEYNGWIE SPGKLFYISI ITLLTIAFVT SAVSGIGKGI QWLSNTNMVL ALVLAVFVFM
VGPTLLMLNL LPTSLGIYIK MLPEMMARTN ASGGEQMNSW LAGWTVFYWA WWISWTPFVG
MFIARISRGR TIRQFVTGVL LVPSLVSLVW FTIFGGAAIE AVREGAFQLA NGAVNSNHAL
YQLLDSYPLA SATSVLVMIL VGIFFVSGAD AASLVMGTLS EHGTTAPSRR TVIFWGTLTG
TVAAIMLAIG DPGNPGEALT GLQNLTIVVA LPFVVVMVLL CLALYRDLRK DPMMLRHLRG
NELIEKAVLY GAVKHGEEFY IVVQEKKASA KTAAEAEVTS N
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