Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1999 |
Symbol | |
ID | 5195183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2259992 |
End bp | 2261281 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640586457 |
Product | outer membrane porin |
Protein accession | YP_001267323 |
Protein GI | 148547221 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00175202 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTTTTCCC CTTTTCCCCT CGCCCCCGGG CGCCGTGTAA CCGGCCTGTT TCTATTGTGT GCCGGTGTCA ACGCCCAGGC TGCTGGGTTT CTTGAAGACG GCAGTGCCAA GATCGAAGCA CGCAATGTCT ATTTCAACCG GGACTTCCGG GACGGTTACA GCAGTTCCAG CCAGGGCGCA TCCAAGCGCG AAGAGTGGGC ACAAGGCTTC ATCCTCAATG TGCAATCGGG TTATACGCAA GGCCCGGTAG GTGTTGGTGT GGATGCGCTG GGCATGTTCG GCTTCAAACT GGACTCCAGC CCGGCCGACA GTAACAGTGG ATTGCTGCCC TCGTCTGGCC ACGACCCCCG GCACTCGGCC GACCAGTATG CGAAGATGGG CCTGGCGGCC AAGGTCAAGG TCTCCAATAC CGTGCTCAAG TACGGCTCAA TGATGCCGGA TGTGCCGTTG CTCAAGTACA ACGATGGCCG TCTGCTGCCG ACCCTGTTCC AGGGTGCCAT GCTCACCTCT GAAGAACTGC ACGACCTGAA GTTCACCCTG GCTCGCCTGG ACAACTACAC CGCTCGGGAT TCCACCGATC GCCAGGACAT CCGCGTGCAC TGCAAGAACA AGCGTTATGC CTGCGATACC GAAGCCGACC ACTTCGACCT GGCCGGTGTC GACTACCGTT TCAACGAGCG TTTCAGCGCC CAGTACCAAG TGGCCAAACT GGAGAATATC TACCGTCAGC ACTTCCTCGG CCTGGTGGCC AGTCAGCCGC TGCCGGTGGG CAGCCTGTCG GCTGACATGC GCCTGATCAA GAGTGATGAC ATCGGCAATG CCCGTGCCGG TGAAATCGAC CATCGCGCCT TCAGCGGCAT GCTTGGCTAC AGCCTTGGTG GCCACAAGCT CAGCGCCGGC TGGCAGCGCA TGTATGGCAA CAGCGCCATG CCGTATCTGG ATGGTAGCAA CCCGTACCTG GTCAACTACG CCCAGGTCAA TGATTTCGCC GCTGCACAGG AGCGCTCCTG GCAAGTGCGC TATGACTACG ACTTCAAGGC GTTGGGTGTG CCCGGCCTGA CCTTCTTCAC CCGTTATATC AACGGCGACA ATATCAAGGT GCCGGGCAGC CGTGCCGAAG GCAAGGAGTG GGAACGCGAC ACCGAGTTCA AATACCAGGT GCAAAGTGGC TCTTTCAAGG ATGTCAGCGT ACGCCTGCGT AATTCCACTT ACCGCAGCAA CTATGAACAG TGGGCGCGTG ACATGGATGA GACGCGGGTC ATTGTCAGCT ACAACTTCTC GATCTTCTAA
|
Protein sequence | MFSPFPLAPG RRVTGLFLLC AGVNAQAAGF LEDGSAKIEA RNVYFNRDFR DGYSSSSQGA SKREEWAQGF ILNVQSGYTQ GPVGVGVDAL GMFGFKLDSS PADSNSGLLP SSGHDPRHSA DQYAKMGLAA KVKVSNTVLK YGSMMPDVPL LKYNDGRLLP TLFQGAMLTS EELHDLKFTL ARLDNYTARD STDRQDIRVH CKNKRYACDT EADHFDLAGV DYRFNERFSA QYQVAKLENI YRQHFLGLVA SQPLPVGSLS ADMRLIKSDD IGNARAGEID HRAFSGMLGY SLGGHKLSAG WQRMYGNSAM PYLDGSNPYL VNYAQVNDFA AAQERSWQVR YDYDFKALGV PGLTFFTRYI NGDNIKVPGS RAEGKEWERD TEFKYQVQSG SFKDVSVRLR NSTYRSNYEQ WARDMDETRV IVSYNFSIF
|
| |