Gene Pput_1956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1956 
Symbol 
ID5193000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand- 
Start bp2226436 
End bp2227557 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content66% 
IMG OID640586417 
Productbifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 
Protein accessionYP_001267283 
Protein GI148547181 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.414878 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.261643 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTCA ACACCATCGA GGAACTTCTC GAGGACTACC GGCAAGGCAA GATGGTCCTG 
CTGGTGGATG ACGAGGACCG GGAAAACGAA GGCGACCTGT TGATCGCCGC CGAGCGCTGC 
GACGCCCAGG CCATCAACTT CATGGCCCGC GAGGCACGCG GCCTGATCTG CCTGACCTTG 
ACCGACGATC ACTGCCAGCG CCTGGGCCTG GAGCAGATGG TTCCGGCCAA CGGTAGCGTG 
TTCAGCACCG CGTTCACCGT GTCGATCGAG GCGGCCACCG GGGTCACCAC CGGCATTTCC 
GCCGCAGACC GGGCACGCAC CGTGGCAGCG GCCATGGCCC CCAACGCCCG CCCCGAAGAC 
CTGGTGCAAC CTGGCCACAT TTTCCCCCTG CGGGCACGCG AAGGCGGCGT GCTGACCCGT 
GCCGGCCACA CCGAAGCCGG CTGCGACCTG GCACGCCTGG CCGGCTTCAG CCCAGCCTCG 
GTCATCGTTG AAGTGCTAAA CGACGACGGC ACCATGGCCC GTCGCCCCGA CCTGGAAGTG 
TTCGCCGCCC GGCATGGCAT CAAGATTGGC ACCATCGCCG ACCTGATCCA CTACCGCCTG 
AGCACCGAGC AGACCATCAA GCGCATCGGC GAGCGCGAGC TACCGACCGT GCATGGCACC 
TTCCGCCTGG TCACGTATGA AGACCGCATC GAAGGTGGCG TGCACATGGC CATGGTCATG 
GGCGACATTC GCCGCGAACA GCCGACCCTG GTGCGGGTGC ATGTGATTGA CCCGCTGCGC 
GACCTGGTGG GTGCCGAGTA CGCCGGCCCC GCCAACTGGA CGCTGTGGGC GGCGCTGCAG 
AAGGTGGCTG AGGAAGGTAC TGGCGTGGTG GTGATCCTGG CCAACCACGA ATCCTCCCAG 
GCCTTGCTTG AGCGTGTGCC ACAACTGACC CACCCTGTGC GGCCCTATCA ACGTGGCCAG 
TCCAAGGTGT ATTCCGAAGT GGGTACCGGG GCGCAAATTC TGCAGGACCT TGGCGTGGGC 
AAGCTGCGTC ACCTGGGGCC ACCGCTGAAA TACGCGGGGC TGGCGGGCTA TGAGCTGGAG 
GTGGTCCAGA GCATCCCGTT CGACCCGGGG ATGGATGGCT GA
 
Protein sequence
MAFNTIEELL EDYRQGKMVL LVDDEDRENE GDLLIAAERC DAQAINFMAR EARGLICLTL 
TDDHCQRLGL EQMVPANGSV FSTAFTVSIE AATGVTTGIS AADRARTVAA AMAPNARPED 
LVQPGHIFPL RAREGGVLTR AGHTEAGCDL ARLAGFSPAS VIVEVLNDDG TMARRPDLEV 
FAARHGIKIG TIADLIHYRL STEQTIKRIG ERELPTVHGT FRLVTYEDRI EGGVHMAMVM 
GDIRREQPTL VRVHVIDPLR DLVGAEYAGP ANWTLWAALQ KVAEEGTGVV VILANHESSQ 
ALLERVPQLT HPVRPYQRGQ SKVYSEVGTG AQILQDLGVG KLRHLGPPLK YAGLAGYELE 
VVQSIPFDPG MDG