Gene Pput_1868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1868 
Symbol 
ID5194826 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2138951 
End bp2140312 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content62% 
IMG OID640586333 
ProductNa+/H+ antiporter NhaA 
Protein accessionYP_001267201 
Protein GI148547099 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3004] Na+/H+ antiporter 
TIGRFAM ID[TIGR00773] Na+/H+ antiporter NhaA 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.138297 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAAAG TAGAATTACC TCGCGCCCAG AAACTGGCTG AGCGCGCCTT CGCCAACCTT 
GAACGCTTTT TGCACATTGA AGCGGTCAGC GGCATCGTTC TGTTGATTGC CGCAGTCGCT
GCCCTGATCT GGGCCAATTC CCCGGCTGCC GACAGTTATG AAGCCCTTTG GCATACGCCG
TTGACGTTCG GCGTGGGCTC GCATGTCTAT TCGCAGTCCC TGCATTTCTG GATCAATGAT
GGCCTGATGA CCATCTTTTT CCTGGTCGTG GGCATGGAGA TCCGCCGCGA AATCCACGAG
GGTGCACTGT CCAGCCTGCG CCAAGCCACA CTCCCCATGG CAGCCGCTGT CGGCGGCGTA
GCGGTACCCG CACTCCTCTA CCTGAGTTTT GGTCACGCGT CGGCAGACCA GCAAGGCTGG
GCCGTGCCAA CGGCGACGGA TATCGCCTTT GCGGTGGGCG TATTGGCCCT GCTCGGCAAG
TCGATCCCGT CCAACGTACG TGTGTTCCTC CTCGCCCTGG CAATCATCGA TGACATCATC
GCAGTCCTGA TCATCGCGTT CTTCTACTCA GGCGGCCTTG ATTACACCGG TTTCGGCGTT
GCACTGATCG GCCTGCTAAT GGTGATCGGG CTTCAAAAGA TCGGTGTGGG TTCAGCCTAC
GCCTACGTCC TTCCCGGTGC GATCGTCTGG CTGGGCATCT TGTTGACCGG CGCCCACCCG
ACCCTCGCAG GCGTCGTGCT GGGCCTGATG ACACCTGTCA CCGCAATGCC GATGCGTGAG
CGCCCACTGG ATGCCATTAC CCGCTTCACC GGCGAATTGC TGGGGCGCGC CAAGGCGCCT
GAGCAAGATG CCAGCGACCT CATGGACCCG TTGAAACGAC TGCGCCTGGC CCAGCGCGAA
CTGCTGCCGC CGGTGGTGCG CATGCAAGGT ACCCTGCACC CCTGGGTAGC CTTCGGCATC
ATGCCGGTGT TTGCCTTGGC CAACGCCGGG GTCAGCCTTT CGGGTGTCGA CCTGTCCGTT
GAAGGCCCCC AGTGGGTCAT GATCGCCGTC GCTGTCGCCC TGGTAGCAGG AAAGCCGTTG
GGCATCGTCA GCGTCAGCTG GCTGATGGTC CGCCTGGGCT GGTGCGTGCT TCCCGCCGAG
ATCAACTGGC GTAGCATTGT CCTGGTCGGG CTGCTGGCCG GTATCGGTTT CACCATGTCG
ATCTTCATCG CCAACCTCGC GTTCGTCGAC CCTGGCTCAC TTGGGGCAGC GAAACTCGGC
GTGCTATCCG CGTCGTTGAT CGCGGCCGTG CTGGGTTTGA CCTGGGGGGT GTGGAGCCTG
CGTAGCACAG CGTCTGCTAC CAAAGCAGGT TCGCCCACCT AG
 
Protein sequence
MHKVELPRAQ KLAERAFANL ERFLHIEAVS GIVLLIAAVA ALIWANSPAA DSYEALWHTP 
LTFGVGSHVY SQSLHFWIND GLMTIFFLVV GMEIRREIHE GALSSLRQAT LPMAAAVGGV
AVPALLYLSF GHASADQQGW AVPTATDIAF AVGVLALLGK SIPSNVRVFL LALAIIDDII
AVLIIAFFYS GGLDYTGFGV ALIGLLMVIG LQKIGVGSAY AYVLPGAIVW LGILLTGAHP
TLAGVVLGLM TPVTAMPMRE RPLDAITRFT GELLGRAKAP EQDASDLMDP LKRLRLAQRE
LLPPVVRMQG TLHPWVAFGI MPVFALANAG VSLSGVDLSV EGPQWVMIAV AVALVAGKPL
GIVSVSWLMV RLGWCVLPAE INWRSIVLVG LLAGIGFTMS IFIANLAFVD PGSLGAAKLG
VLSASLIAAV LGLTWGVWSL RSTASATKAG SPT