Gene Pput_1805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1805 
Symbol 
ID5193792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp2073021 
End bp2073980 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content67% 
IMG OID640586273 
Productribonuclease Z 
Protein accessionYP_001267142 
Protein GI148547040 
COG category[R] General function prediction only 
COG ID[COG1234] Metal-dependent hydrolases of the beta-lactamase superfamily III 
TIGRFAM ID[TIGR02651] ribonuclease Z 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.426345 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTGC TGTTCCTCGG CACCTCCGCC GGGGTGCCCA CCAAGGCACG CAATGTCAGC 
GCCACAGCTG TGATCGAAGC CAGTGGCAGC CACTGGTATC TGGTCGATTG CGGCGAAGGC
ACCCAGCACC GCCTGCTGCA CACCCCGCTT TCGATCCGCG ACCTGCGCGC GATCTTCATC
ACCCACGTGC ATGGTGACCA TTGCTTCGGC CTGCCCGGCC TGCTGGCCAG CGCGGGCATG
AGCGGGCGCA CCCAGCCGCT GGAAGTGATC CTGCCCGCCG TACTGCACGA TTGGGTACGC
CAGGGCCTGG TTGCCAGCGA CACCTTCCTG CCGTTCGAGC TACGCCTGTT GCCCGTGGAA
GCGCTGATCG CATGGCGCAG CGAGACCCTG CAGGTGACCA CCGTGCAACT GTCGCACCGG
GTGCCCAGCG TGGGTTTCGT ATTCACCGAA ATCAACCCTG AGCCACGCCT GGACATCCAG
CGCCTGGACG CCGAGGGCAT ACCGCGTGGT CCGCTGTGGG GCGAGCTGGC CAAGGGGTTG
ACCGTGACGT TCAACGGGCA ACTGCTGAAC GGCAACGACT ACCTGCGCCC TTCGCGTCCG
CCCCAGCGGG TGATCGTGTG CGGGGACAAC GACAAACCAG CGCTGCTGGC AGCCGTCGCC
AGGGGGGCGG ATGTACTGGT GCACGAAGCC ACCTTCACCC AGGCGGTGGT CGAACGCACC
GGGGGCACGT TCGGCCACAG CACCGCCGCT GAGGTGGCAC GCTTTGCCGA GGCCGCTGGC
GTGCGCAACC TGGTACTGAC GCATTTCAGC GCCCGCTACC AGAACGACCC ACGGCGCAGC
CCGCACATCG ACACCGTGCG CGACGAGGCC CTCGCCCATT ACAGCGGGCA GTTGACCCTG
GCGCAGGACC TGCAGCGCTA TCACCTTGGC CGTAACGGCC TTCTTGAGGC CAGTGCCTAG
 
Protein sequence
MDLLFLGTSA GVPTKARNVS ATAVIEASGS HWYLVDCGEG TQHRLLHTPL SIRDLRAIFI 
THVHGDHCFG LPGLLASAGM SGRTQPLEVI LPAVLHDWVR QGLVASDTFL PFELRLLPVE
ALIAWRSETL QVTTVQLSHR VPSVGFVFTE INPEPRLDIQ RLDAEGIPRG PLWGELAKGL
TVTFNGQLLN GNDYLRPSRP PQRVIVCGDN DKPALLAAVA RGADVLVHEA TFTQAVVERT
GGTFGHSTAA EVARFAEAAG VRNLVLTHFS ARYQNDPRRS PHIDTVRDEA LAHYSGQLTL
AQDLQRYHLG RNGLLEASA