Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1772 |
Symbol | |
ID | 5192161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 2025099 |
End bp | 2025752 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640586242 |
Product | putative prophage repressor |
Protein accession | YP_001267111 |
Protein GI | 148547009 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000000601077 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000377038 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGAAAACT GGAACGCATT TCTCAAGCGC TACAAGCGCG AACATAACCT CAGTCAGCTC CAACTGGCCG AGCGCCTGGG CATGACGCAG GGGGGCGTGG GGCATTGGCT GCGTGGCACG CGTCGGCCGA CGCTGGAAAC CATCAATGAA AAGCTGGAGA AGCTTGGGCT GGTGTTTCTG GAAGCCCAGG TCATGGTGGT CGAGCGCGAC ATCGTGCGTG AAGCGCAAGG GCTCTATACG GCCGAGCAGC CGGTTTCAGC CGAGGCGCTG CTCTATGCCA GCTTCCGCTT CCCGGTGCTG AGTTGGGCTG ACCTGCAGGG GCCATTGCCT GAAACGAGCA CGTCCCATGA GCAGACGGAC TATATGCCCG CCGGCAATGC GTTCTGGCTG GTGGTGGAAA ACGACTCGAT GAACGCGGCC AGTGGTAAGA GCGTGCCCGA GGGTATGCGC GTGCTGGTGG ATACCGGGCT GGAGGCACAG CCCGGCAGGT TGGTCATTGC ACGGCAGCCG GGGCGCCCGG CGGTATTGCG GCAGTTGGTC GAAGAGGGTG GAGACAAGAT GCTCAGGCCA CTGAATACGC GCTATCCGAC GGTTTTGTGT GAAGAAGGCT GCGCGTTTCT GGGAGTGGTG GTGCGGGTAC ATGGGGCCTT CTAG
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Protein sequence | MENWNAFLKR YKREHNLSQL QLAERLGMTQ GGVGHWLRGT RRPTLETINE KLEKLGLVFL EAQVMVVERD IVREAQGLYT AEQPVSAEAL LYASFRFPVL SWADLQGPLP ETSTSHEQTD YMPAGNAFWL VVENDSMNAA SGKSVPEGMR VLVDTGLEAQ PGRLVIARQP GRPAVLRQLV EEGGDKMLRP LNTRYPTVLC EEGCAFLGVV VRVHGAF
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