Gene Pput_1766 details

Gene Information

• Locus tag: Pput_1766
• Symbol: uvrC
• ID: 5192117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida F1
• Kingdom: Bacteria
• Replicon accession: NC_009512
• Strand: +
• Start bp: 2019641
• End bp: 2021464
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640586236
• Product: excinuclease ABC subunit C
• Protein accession: YP_001267106
• Protein GI: 148547004
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.0738607
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.000573829
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGTCCCAAG TCTTTGATGC CAGCGCATTC CTGGCGACCT GCAGCGGTCG CCCGGGCGTT 
TACCGGATGT TCGACGGCGA AGCCCGGCTG CTTTACGTGG GCAAGGCCAA GAACCTGAAG 
AAACGCCTGG CCAGCTATTT CCGCAAGGCT GGCCTTGCGC CCAAGACCGC CGCGCTGGTT 
GCGCGCATCG CCCAGGTTGA AACCACCATC ACCGCCAACG AAACCGAGGC GTTGCTGCTG 
GAGCAGAACC TGATCAAGGA GTGGCGGCCG CCTTACAACA TCCTGCTGCG CGACGATAAG 
TCCTACCCCT ACGTGTTTCT GTCCGATGGC GAGTTCCCGC GCCTGGGCAT TCACCGTGGG 
GCGAAAAAGG CCAAGGGCCG TTACTTTGGC CCGTACCCCA GCGCCGGGGC CATTCGCGAA 
AGCCTCAGCC TGCTGCAAAA GGCCTTTTCT GTGCGTCAGT GCGAAGACAG CTACTACGCC 
AACCGCACCC GGCCATGCCT GCAGTACCAG ATAAAGCGCT GCAAAGGGCC CTGCACCGAC 
CTGGTGACTG CCGAGGAATA CGCAGAGGAC GTGCGTCATT CGGTGATGTT TCTGGAAGGG 
CGTAGCCAGC AACTGGGCAA TGAGTTGAAC GCCGAGATGG AGAAGGCCGC CATGGCCCTC 
GATTTCGAAA AAGCCGCCGA GCTGCGCGAC CAGATCGCCT TGTTGCGCCG CGTGCAGGAC 
CAGCAGTACA TCGAGGGCGG CAGCGGCGAT GTCGACGTCA TCGCCGCCTT CGTCAACCCG 
GGTGGTGCCT GTGTGCACCT GATCAGCGTG CGCGGCGGGC GAGTACTGGG CAGCAAGAAC 
TTCTTCCCGC AGGTGGGCAT CGAGGAGGAG GTGGCCGAGG TCATGGCCGC ATTCCTGTCC 
CAGTACTATC TGGGCAACGC AGAGCGCGAG CTGCCCGGCG AGTTGATTGT CAACGTTGTT 
CACGAAGACT TCAACGCCAT CACCGAAGCG CTGCACACGC TGCGTGGCCG CGAACTGACC 
ATCAGCCACC GGGTGCGCGG CACCCGCGCC CGCTGGCAGC AACTGGCCGT GACCAATGCC 
GAGCAGGCGC TGAATGCCCG CCTGGCCAAC CGTCAGCACA TGGCTGCGCG CTTCGAAGCC 
CTGGCCGAAG TGCTGGGCCT GGATGAAGTG CCGCAACGCC TGGAATGCTA CGACATCAGC 
CACTCCAGTG GTGAAGCTAC CGTGGCCAGT TGCGTGGTGT TCGGCCCCGA AGGGCCGATC 
AAGTCCGACT ACCGCCGCTT CAATATCGAA GGCGTCACCG CAGGTGACGA TTACGCGGCC 
ATGCATCAGG CCCTGACCCG CCGCTATGGG CGCATCAAGG ACGGCGAGGG CAAGCTGCCC 
GACGTGCTGC TGGTGGACGG CGGCAAAGGC CAACTGAACA TGGCCCGCGA TGTGATGCAG 
GCGCTGGGCT TCACCGACCT GACCCTGCTG GGTGTGGCCA AGGGCGTTAC ACGCAAGGCG 
GGTTTCGAAA CCCTGTACCT GAACGATGTG CATCACGAAT TCACCCTCAA GGGCGATTCA 
TCGGCGTTGC ACCTGATCCA ACAGATCCGC GACGAAGCCC ACCGCTTCGC TATCACCGGC 
CACCGCGCCC GCCGTGGCAA GGCCCGTCGA GTCTCCAGCC TTGAAGATGT GGCCGGGGTA 
GGGCCCAAGC GCCGCCGCGA CCTGCTGAAA CATTTCGGCG GCCTGCAGGA GCTCAACCGC 
GCCAGTATCG ATGAAATCGC CAAAGCCCCC GGCATCAGTA AAAAGCTTGC CGAGTCGATT 
TATGCCAGCC TGCATAGCGA GTAG 

 

Protein sequence

MSQVFDASAF LATCSGRPGV YRMFDGEARL LYVGKAKNLK KRLASYFRKA GLAPKTAALV 
ARIAQVETTI TANETEALLL EQNLIKEWRP PYNILLRDDK SYPYVFLSDG EFPRLGIHRG 
AKKAKGRYFG PYPSAGAIRE SLSLLQKAFS VRQCEDSYYA NRTRPCLQYQ IKRCKGPCTD 
LVTAEEYAED VRHSVMFLEG RSQQLGNELN AEMEKAAMAL DFEKAAELRD QIALLRRVQD 
QQYIEGGSGD VDVIAAFVNP GGACVHLISV RGGRVLGSKN FFPQVGIEEE VAEVMAAFLS 
QYYLGNAERE LPGELIVNVV HEDFNAITEA LHTLRGRELT ISHRVRGTRA RWQQLAVTNA 
EQALNARLAN RQHMAARFEA LAEVLGLDEV PQRLECYDIS HSSGEATVAS CVVFGPEGPI 
KSDYRRFNIE GVTAGDDYAA MHQALTRRYG RIKDGEGKLP DVLLVDGGKG QLNMARDVMQ 
ALGFTDLTLL GVAKGVTRKA GFETLYLNDV HHEFTLKGDS SALHLIQQIR DEAHRFAITG 
HRARRGKARR VSSLEDVAGV GPKRRRDLLK HFGGLQELNR ASIDEIAKAP GISKKLAESI 
YASLHSE