| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1742 |
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| Symbol | |
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| ID | 5192793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1993761 |
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| End bp | 1995122 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640586212 |
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| Product | NADH dehydrogenase I subunit F |
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| Protein accession | YP_001267082 |
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| Protein GI | 148546980 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
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| TIGRFAM ID | [TIGR01959] NADH-quinone oxidoreductase, F subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00767478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.368262 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATTA CTTCCTTCGG CCCGGCCAAC CGCATCGCGC GCTCGGCCGA AACCCACCCG
CTGACCTGGC GCCTGCGTGA CGACGGCGAG CCGGTCTGGC TGGCCGAGTA CGAATCGAAG
AACGGCTACG CCGCAGCCCG CAAGGCGCTG GCGCAAATGT CCGCCGACGA CATCGTGCAG
AGCGTCAAGG ACTCCGGCCT CAAAGGCCGT GGCGGCGCAG GCTTCCCCAC TGGCGTGAAG
TGGGGCCTGA TGCCCAAAGA CGAATCCATG AACATCCGCT ACCTGCTGTG CAACGCGGAC
GAAATGGAGC CGAACACCTG GAAGGACCGC ATGCTGATGG AGCAACAGCC CCATCTGCTG
GTCGAGGGCA TGCTGATCAG CGCCCGCGCC CTGAAGGCCT ACCGCGGCTA CATCTTCCTG
CGTGGCGAGT ACACCACCGC AGCGAAAAAC CTCAACCGCG CCATCGATGA AGCCAAGGCC
GCCGGCCTGC TGGGCAAGAA CATCCTGGGC AGCGGTTTCG ATTTCGAGCT GTTCGTGCAC
ACCGGTGCCG GCCGCTACAT CTGCGGTGAA GAAACCGCGC TGATCAACTC GCTGGAAGGC
CGCCGCGCCA ACCCGCGCTC CAAGCCGCCC TTCCCTGCCG CCGTTGGCGT GTGGGGCAAG
CCGACGTGCG TGAACAACGT CGAGACCCTG TGCAACGTCC CGGCCATCGT CGCCAACGGC
AACGACTGGT ACAAGTCGCT GGCCCGCGAA GGCAGCGAAG ACCATGGCAC CAAGCTGATG
GGCTTCTCCG GCAAGGTAAA GAACCCAGGC CTGTGGGAAC TGCCATTTGG CGTTACCGCG
CGCGAATTGT TCGAAGACTA CGCCGGTGGC ATGCGTGATG GCTTCAAGCT CAAGTGCTGG
CAGCCAGGCG GCGCCGGTAC CGGCTTCCTG CTGCCTGAGC ACCTCGATGC GCAAATGTAC
GCCGGTGGCA TCGCCAAGGT CGGCACCCGT ATGGGTACTG GCCTGGCCAT GGCGGTCGAC
GACAGCATCA ACATGGTGTC GCTGCTGCGC AACATGGAAG AGTTCTTTGC CCGCGAATCG
TGCGGCTGGT GCACCCCATG CCGTGACGGC CTGCCGTGGA GCGTGAAGAT GCTGCGCGCG
CTGGAAAACG GCCAAGGCCG CGCCGAGGAC ATCGAGACGC TGCTGGGGCT GGTCAACTTC
CTCGGCCCGG GCCGTACCTT CTGTGCTCAC GCACCGGGTG CCGTCGAGCC GCTGGGCAGT
GCCATCAAAT ACTTCCGCTC GGAGTTCGAG GCCGGTGTGG CGCCAGAAAG CGCTGCCACC
CTGCGCCCCG ACCTGGCGAA GCCGATCGTG GTCGGCGCAT AA
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| Protein sequence | MTITSFGPAN RIARSAETHP LTWRLRDDGE PVWLAEYESK NGYAAARKAL AQMSADDIVQ
SVKDSGLKGR GGAGFPTGVK WGLMPKDESM NIRYLLCNAD EMEPNTWKDR MLMEQQPHLL
VEGMLISARA LKAYRGYIFL RGEYTTAAKN LNRAIDEAKA AGLLGKNILG SGFDFELFVH
TGAGRYICGE ETALINSLEG RRANPRSKPP FPAAVGVWGK PTCVNNVETL CNVPAIVANG
NDWYKSLARE GSEDHGTKLM GFSGKVKNPG LWELPFGVTA RELFEDYAGG MRDGFKLKCW
QPGGAGTGFL LPEHLDAQMY AGGIAKVGTR MGTGLAMAVD DSINMVSLLR NMEEFFARES
CGWCTPCRDG LPWSVKMLRA LENGQGRAED IETLLGLVNF LGPGRTFCAH APGAVEPLGS
AIKYFRSEFE AGVAPESAAT LRPDLAKPIV VGA
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