| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1725 |
|---|
| Symbol | |
|---|
| ID | 5191148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1976191 |
|---|
| End bp | 1978440 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640586195 |
|---|
| Product | lysine decarboxylase |
|---|
| Protein accession | YP_001267065 |
|---|
| Protein GI | 148546963 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.879882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.772169 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAAGG ACCTCAAGTT CCCGATCCTC ATCGTCCACC GCGCCATCAA GGCCGACAGT
GTTGCTGGCG AGCGTGTGCG CGGCATCGCC GAGGAATTGC GCCAGGATGG CTTTGCCATT
CTCGCCGCCG CTGACCACGC CGAAGCGCGC CTGGTCGCCG CCACCCACCA CGGCCTGGCC
TGTATGCTCA TCGCGGCCGA AGGCGCTGGC GAGAACACCC ATCTGCTGCA GAACATGGCC
GAGCTGATTG GCCTGGCCCG CCTGCGTGCA CCCAACCTGC CGATCTTCGC CCTGGGCGAG
CAGGTGACCC TGGAAAATGC TCCCGCCGAA GCCATGAGCG AGCTCAACCA GCTGCGTGGC
ATCCTTTACC TGTTCGAAGA CACCGTGCCG TTTCTCGCCC GCCAGGTGGC GCGTGCTGCA
CACACCTACC TCGACGGCCT GCTGCCGCCG TTCTTCAAGG CGCTGGTGCA GCACACCGCG
CAGTCCAACT ATTCCTGGCA CACCCCAGGC CATGGTGGCG GTGTGGCCTA TCATAAAAGC
CCGGTAGGCC AAGCCTTTCA CCAGTTCTTT GGGGAAAATA CCCTGCGCTC GGACCTGTCC
GTTTCCGTGC CGGAGCTGGG TTCGCTGCTC GACCACACAG GCCCGCTGGC TGAAGCCGAG
GTCAGGGCGG CGCGCAACTT CGGCGCCGAC CACACCTTCT TCGTCATCAA TGGTACCTCC
ACGGCCAACA AGATCGTCTG GCACGCCATG GTCGGCCGTG ACGACCTGGT GCTGGTGGAC
CGCAACTGCC ACAAGTCGGT GGTGCACGCG ATCATCATGA CGGGTGCCAT CCCGCTGTAC
CTGTGCCCGG AGCGCAACGA ACTGGGCATC ATCGGCCCGA TCCCGCTCAG CGAGTTCAGC
CCCGAGGCGA TCGCCGCGAA GATTCAGGCC AACCCCCTTG CCCGTGATCG TGGGCAGCGT
ATCAAGCTGG CGGTAGTGAC CAACTCCACC TACGACGGGC TGTGTTACCA CGCCGGGCTG
ATCAAGCAGG CCCTGGGTGC CAGTGTCGAG GTGCTGCACT TCGACGAGGC CTGGTTTGCC
TATGCTGCGT TCCACGACTT TTTCACCGGG CGCTACGCCA TGGGCACCGC CTGCGCGGCA
GACAGCCCGC TGGTGTTCAG TACCCATTCC ACCCACAAGC TGCTCGCGGC GTTCAGCCAG
GCTTCGATGA TTCATGTGCA GGACGGGGCC AGGCGGCAGC TGGACCGGGA CCGTTTCAAC
GAAGCGTTCA TGATGCACAT CTCTACCTCG CCGCAGTACA GCATTCTCGC CTCGCTGGAT
GTGGCTTCGG CCATGATGGA AGGGCCGGCC GGGCGCTCGC TGCTGCAGGA GATGTTCGAC
GAGGCGTTGA GTTTTCGTCG TGCCCTGGCC AACCTGCGTG AGCACATTGC CGCAGAGGAC
TGGTGGTTCA GCATCTGGCA GCCGCCAAGT GCCGAGGGCA TCCCCCGTCT GGCCGCGCAG
GACTGGTTGT TGCAGCCGGG GGCGCAATGG CATGGTTTTG GTGAAGTGGC GGCCGACTAT
GTGCTGCTCG ACCCGCTGAA AGTGACTTTG GTGATGCCGG GCCTGAGCGC TGATGGTGTG
CTGGGCGTGC ACGGCATCCC GGCGGCAGTC GTCAGCAAGT TTCTCTGGGA GCGCGGGCTG
GTGGTGGAAA AAACCGGCCT GTACAGCTTC CTGGTGCTGT TTTCCATGGG CATCACCAAG
GGCAAGTGGA GCACCTTGCT CACCGAACTG CTGGAGTTCA AGCGCCACTA TGACGGCAAC
ACCCCACTCA GCAGCTGCCT GCCCAGTGTG GGGGCTGCCG ACGCCTTGCG CTACCAGGGC
ATGGGCCTGC GCGACCTGTG CGACCAGTTA CATGACTGCT ACCGCGCCAA TGCCACGGCC
AAGCAGCTGA AGCGGCTGTT CACCCGTTTG CCGGAGGTGG CCGTCAGCCC GGCCCAGGCC
TATGACAAGA TGGTGCGTGG CGAAGTGGAG GCGGTGCCGA TCGAGGCACT ACTGGGGCGT
GTGGCGGCGG TGATGCTGGT GCCGTACCCG CCTGGCATCC CGTTGATCAT GCCAGGTGAG
CGGTTCACCG AGGCGACCCG CTCGATCCTG GACTACCTGG CATTCGCCCG AGCATTCAAC
CAGGGCTTTC CCGGGTTTGT CGCCGATGTG CACGGCCTGC AGCACGAAGG GGGCCGCTAC
ACGGTGGATT GCATCACGGA ATGCGCGTGA
|
|---|
| Protein sequence | MYKDLKFPIL IVHRAIKADS VAGERVRGIA EELRQDGFAI LAAADHAEAR LVAATHHGLA
CMLIAAEGAG ENTHLLQNMA ELIGLARLRA PNLPIFALGE QVTLENAPAE AMSELNQLRG
ILYLFEDTVP FLARQVARAA HTYLDGLLPP FFKALVQHTA QSNYSWHTPG HGGGVAYHKS
PVGQAFHQFF GENTLRSDLS VSVPELGSLL DHTGPLAEAE VRAARNFGAD HTFFVINGTS
TANKIVWHAM VGRDDLVLVD RNCHKSVVHA IIMTGAIPLY LCPERNELGI IGPIPLSEFS
PEAIAAKIQA NPLARDRGQR IKLAVVTNST YDGLCYHAGL IKQALGASVE VLHFDEAWFA
YAAFHDFFTG RYAMGTACAA DSPLVFSTHS THKLLAAFSQ ASMIHVQDGA RRQLDRDRFN
EAFMMHISTS PQYSILASLD VASAMMEGPA GRSLLQEMFD EALSFRRALA NLREHIAAED
WWFSIWQPPS AEGIPRLAAQ DWLLQPGAQW HGFGEVAADY VLLDPLKVTL VMPGLSADGV
LGVHGIPAAV VSKFLWERGL VVEKTGLYSF LVLFSMGITK GKWSTLLTEL LEFKRHYDGN
TPLSSCLPSV GAADALRYQG MGLRDLCDQL HDCYRANATA KQLKRLFTRL PEVAVSPAQA
YDKMVRGEVE AVPIEALLGR VAAVMLVPYP PGIPLIMPGE RFTEATRSIL DYLAFARAFN
QGFPGFVADV HGLQHEGGRY TVDCITECA
|
|---|
| |