Gene Pput_1720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1720 
Symbol 
ID5191445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1971485 
End bp1972915 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content64% 
IMG OID640586190 
ProductMltD domain-containing protein 
Protein accessionYP_001267060 
Protein GI148546958 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.131331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCC GTAGCCGCAG AACCTCTCAT TCCGTCGCCC TGACGCGCCT GGCCCAAATC 
AGTGCGCTGG CCCTGGCCGC CACCTTGGTG GGCTGCCAGA GCACCCGTCA GCTCGACGAA
TCCGATAGCG TTCGCGCGCA CAACTACCAG GCGCGGATCA AGCACAAGCC TTCTCCGCTG
CTGGTCAAGC CGGCCGAGCA GGCGCCGCAG GATGTCTGGG AGCGCATGCG CCAGGGCTTC
GCCCTGCAGG ACAGCATCGA CGTCAACCCG CGCATCGAAC AGCAGCGCTT GTGGTTCGCC
AGCAACCCGA CCTTCATCGA AAGCGCCGGG GAACGTGGCA GCCTCTACCT GCACTACATC
GTCGAGCGCC TTGAAGAACG CGACATGCCG CTGGAACTGG CCCTGCTGCC AGCCATCGAA
AGTGCCTACA ACCCCATGGC CTACTCACGC GCCAGCGCTG CCGGCATGTG GCAGTTCATG
CCGGCTACCG GTCGCCACTT CAACCTGCGC CAGACCAACT TCTATGACGG CCGCCGCGAT
GTCACCGCGT CGACCAACGC CGCGCTGGAC TACCTGACCC GCCTGCACGA CATGTTCAAC
GGCGACTGGC TGTTGGCCCT GGCGGCCTAC AATGCCGGCG AAGGCACCGT CAGCCGAGCC
ATCGAGCGCA ACGAAAGGCT CGGCCTGCCG ACCGACTACT GGAACCTGCC GCTACCACAG
GAAACCCGCG ACTACGTACC CAAGTTGCTG GCACTGTCGC AGGTGGTGTC CACGCCAGAA
GCCTATGGTG TCAATCTCAC CCCGATCGCC AACGAACCGT ACTTCGAAGC GGTGGCGATC
AATGATCGCC TGGACCTTAC CCGGGTCGCG GCCTTTGCCA ACATCGACGA GGACGAGCTG
ATCCAGCTCA ACCCGGCATT CAAGAAGCGC ATGACCGTCG ATGGCCCGAA ACAGCTGCTG
GTGCCCACCG CCAAGGCGCA GTTGCTCAGT GCCAGCCTGT CCAACCTCAA CCCGGAGCAA
CTGGTCAGCC TGCAACCGCC GAAAGCAGCG TTTGCCCGGG CTGTGGCCGA AGCCAAGGCA
CCGGTGGGGG CGCGTAGCTA CCGGGTCAAG CGTGGCGATA ACCTAAGCGC CATCGCCAAG
GTCAACCGTG TGTCGGTCAA GGACATCAAG CGCTGGAACC GTTTGTCCGG CAACAGTCTG
CGTGCTGGCC AGGTTCTGGC CCTGCGCGGT GGCAGTGCAC CGAGCGCCGC CGGCAACCGG
GTTGCCGCCT CCGGGAAGCG CTCCACGCAA TACAAGGTCC GCAAGGGCGA TTCCCTGTAC
CTGGTGGCCA AGCGCTTCAA TGTGGAAATG AAGCACCTCA AGCGCTGGAA CCCACGCAGC
GGCCATGCCC TCAAGCCAGG CCAGACCCTG ACCGTCTACC TCGGGCATTG A
 
Protein sequence
MSSRSRRTSH SVALTRLAQI SALALAATLV GCQSTRQLDE SDSVRAHNYQ ARIKHKPSPL 
LVKPAEQAPQ DVWERMRQGF ALQDSIDVNP RIEQQRLWFA SNPTFIESAG ERGSLYLHYI
VERLEERDMP LELALLPAIE SAYNPMAYSR ASAAGMWQFM PATGRHFNLR QTNFYDGRRD
VTASTNAALD YLTRLHDMFN GDWLLALAAY NAGEGTVSRA IERNERLGLP TDYWNLPLPQ
ETRDYVPKLL ALSQVVSTPE AYGVNLTPIA NEPYFEAVAI NDRLDLTRVA AFANIDEDEL
IQLNPAFKKR MTVDGPKQLL VPTAKAQLLS ASLSNLNPEQ LVSLQPPKAA FARAVAEAKA
PVGARSYRVK RGDNLSAIAK VNRVSVKDIK RWNRLSGNSL RAGQVLALRG GSAPSAAGNR
VAASGKRSTQ YKVRKGDSLY LVAKRFNVEM KHLKRWNPRS GHALKPGQTL TVYLGH