| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1663 |
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| Symbol | sdhA |
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| ID | 5194267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1865783 |
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| End bp | 1867555 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640586133 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001267003 |
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| Protein GI | 148546901 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGCA TTCCAACCAT TTCCTTCGAC GCCATCATCA TCGGTGGCGG CGGCGCCGGC
ATGCGCGCAG CGCTGCAACT GGCTCAAGGC GGCCACAAGA CTGCCGTAGT CACCAAGGTC
TTCCCGACCC GTTCGCACAC CGTATCCGCC CAGGGCGGCA TCACCTGCGC CATCGCTTCG
GCCGACCCGA ACGACGACTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC
ATCGGTGACC AGGACGCTAT CGAATACATG TGTCAGGAAG GCCCGGCTGC GGTCTTCGAA
CTGGACCACA TGGGTCTGCC GTTCTCGCGC ACTGAAACCG GCCGCATCTA TCAGCGCCCG
TTCGGTGGTC AGTCCAAGGA CTTCGGTAAA GGTGGCCAGG CCGCCCGTAC CTGTGCCGCT
TCGGACCGTA CCGGTCACGC GCTGCTGCAC ACCCTGTACC AGGGCAACCT GAAAGCGGGC
ACCACGTTCC TCAACGAGTA CTACGCAGTT GACCTGGTGA AGAACCAGGA CGGCGCATTC
GTGGGTGTGA TCGCCATCTG CATCGAAACC GGCGAAACCC TGTACATCAA GTCCAAGGCC
ACCGTACTGG CCACTGGCGG TGCAGGCCGT ATCTACGCGT CCACCACCAA CGCCCTGATC
AATACCGGTG ACGGTATCGG CATGGCCCTG CGTGCAGGCG TGCCGGTGCA GGACATCGAG
ATGTGGCAGT TCCACCCGAC CGGTATCGCC GGCGCCGGTG TACTGGTCAC CGAAGGTTGC
CGCGGTGAAG GTGGCTACCT GATCAACGCC CACGGCGAGC GCTTCATGGA GCGTTACGCG
CCGAACGCCA AAGACCTGGC CGGCCGCGAC GTGGTTGCCC GTTCCATGGT CAAGGAAATC
ATCGCCGGCA ACGGCGTGGG CCCGAACAAG GACCACGTAC TGCTGAAGCT GGACCACCTG
GGCGAGGAAG TGCTGCACAG CCGCCTGCCA GGTATCTGCG AACTGTCCAA GACCTTCGCC
CACGTCGACC CTGTGGTCGC GCCGGTGCCG GTGGTTCCAA CCTGCCACTA CATGATGGGC
GGCGTTGCCA CCAACATCCA TGGCCAGGCC ATCACCATGG ACGCCGACGG TCAGGATCAC
ATCATCCCGG GCCTGTTCGC CGTAGGTGAA GTGGCGTGCG TATCGGTTCA CGGTGCCAAC
CGCCTGGGCG GCAACTCGCT GCTCGACCTG GTGGTGTTCG GCCGTGCTGC CGGCCTGCAT
CTGGAGAAGG CGCTGAGCGA GGGCGTGGAA TACCGCGACG CCAGCGACAC CGACGTCGAT
GTTGCCCTGA ACCGCCTGAA CAAGCTCAAC GAGCGTACCA GCGGTGAAGA CGTTGCCAGC
CTGAAGCGCG AGCTGCAGAG CTGCATGCAG AACTACTTCG GTGTATTCCG TACTGGCGAA
TACATGCAGA AGGGTATCGA GCAACTGGCC GGTCTGCGTG ACCGTATCGC CAACGTCAAG
ATCAACGACA AGTCCCAGGC CTTCAACACC GCGCGTATCG AAGCGCTGGA GCTGCAGAAC
CTGCTGGAAG TTGCCGAAGC TACCGCCATC GCGGCGGAAG CCCGTAAAGA GTCCCGCGGC
GCTCACGCCC GTGAAGACTT CGAAGACCGT GACGACGAAA ACTGGCTGTG CCACACCCTG
TACTACCCGG GTGAGAAGCG CGTTGCCAAG CGCGGCGTCA ACTTTGCGCC GAAGACTGTT
CCAGCCTTCG AACCAAAAGT CCGGACTTAC TAA
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| Protein sequence | MASIPTISFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CQEGPAAVFE LDHMGLPFSR TETGRIYQRP
FGGQSKDFGK GGQAARTCAA SDRTGHALLH TLYQGNLKAG TTFLNEYYAV DLVKNQDGAF
VGVIAICIET GETLYIKSKA TVLATGGAGR IYASTTNALI NTGDGIGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINA HGERFMERYA PNAKDLAGRD VVARSMVKEI
IAGNGVGPNK DHVLLKLDHL GEEVLHSRLP GICELSKTFA HVDPVVAPVP VVPTCHYMMG
GVATNIHGQA ITMDADGQDH IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGLH
LEKALSEGVE YRDASDTDVD VALNRLNKLN ERTSGEDVAS LKRELQSCMQ NYFGVFRTGE
YMQKGIEQLA GLRDRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEARKESRG
AHAREDFEDR DDENWLCHTL YYPGEKRVAK RGVNFAPKTV PAFEPKVRTY
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