Gene Pput_1615 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1615 
Symbol 
ID5193522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1806165 
End bp1807106 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content62% 
IMG OID640586085 
Productcytochrome c oxidase, cbb3-type, subunit III 
Protein accessionYP_001266955 
Protein GI148546853 
COG category[C] Energy production and conversion 
COG ID[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR00782] cytochrome c oxidase, cbb3-type, subunit III 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0748863 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0271548 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACCT TCTGGAGTAC GTACATCAGC GTACTGACCA TCGGTAGCCT GATTGGCCTG 
ACCTGGCTAC TGCTCGCCAC GCGCAAGGGC CAGAGCAACA ACACCACCGA CGAGACCATG
GGCCACAGCT TCGACGGTAT CGAGGAGTAC GACAACCCGC TGCCCAAGTG GTGGTTCTGG
CTGTTCGTTG GCACCTTGGC GTTCTCGGTC GGCTACCTGA TCCTCTACCC GGGCCTGGGC
AACTGGAAAG GCATCCTGCC GGGCTATGAA AATGGCTGGA CTGGCGCCAA CGAATGGCAG
AAGGAAATGG ACAAGGCCGA TGCCAGGTTC GGTCCGATCT TCGCCAAATA CGCCGCCATG
CCCGTAGAAG AAGTGGCGAA GGACCCGCAG GCGCTGAAAA TGGGCAGCCG CCTGTTCGCC
TCCAACTGCT CGGTGTGCCA CGGTTCCGAC GCCAAGGGCG CCTTCGGTTT CCCCAACCTC
ACCGACAATG ACTGGCGCTG GGGCGGCGAT CCGGAAACCA TCAAGACCAC CATCATGAGC
GGTCGCCATG GCGTGATGCC GGCCTGGGCC GAAGTGATCG GTGACCAGGG CGTGGCCGAC
GTGGCTGCGT TCGTGGTCAG CAAACTCGAT GGCCGCACAC TGCCTGAGGG GGCGAAGGCC
AATGTGGAGA ACGGGCAGAA GATCTTCGCA GCCAACTGCG TGGCCTGCCA CGGGCCGGAA
GGCAAAGGTA CGCCCGCCAT GGGCGCACCG AACCTGACCC ACCCGCAGGC GTTCATCTAT
GGCTCGAGCT TTGCCCAGCT GCAGCAGACC ATTCGTTATG GTCGCCAAGG GCAAATGCCG
GCGCAGGCCG AGATCCAAGG GAATGACAAG GTGCACCTGC TGGCGGCTTA TGTGTATAGC
CTGTCGCAGG ATGGTTCGGC TGAGACCGTG ACGGCCAAGT GA
 
Protein sequence
MTTFWSTYIS VLTIGSLIGL TWLLLATRKG QSNNTTDETM GHSFDGIEEY DNPLPKWWFW 
LFVGTLAFSV GYLILYPGLG NWKGILPGYE NGWTGANEWQ KEMDKADARF GPIFAKYAAM
PVEEVAKDPQ ALKMGSRLFA SNCSVCHGSD AKGAFGFPNL TDNDWRWGGD PETIKTTIMS
GRHGVMPAWA EVIGDQGVAD VAAFVVSKLD GRTLPEGAKA NVENGQKIFA ANCVACHGPE
GKGTPAMGAP NLTHPQAFIY GSSFAQLQQT IRYGRQGQMP AQAEIQGNDK VHLLAAYVYS
LSQDGSAETV TAK