| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1613 |
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| Symbol | |
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| ID | 5194320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1804136 |
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| End bp | 1805578 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586083 |
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| Product | cbb3-type cytochrome c oxidase subunit I |
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| Protein accession | YP_001266953 |
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| Protein GI | 148546851 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
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| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00989974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00775448 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCACAG CAATCAGTCC GACTGCTTAT AACTATAAGG TCGTCCGCCA GTTCGCCATC
ATGACGGTGG TCTGGGGGAT CCTTGGCATG GGCCTCGGCG TCTTCATCGC CTCGCAGCTG
GTGTGGCCGC AGCTGAACCT GGACCTTCCC TGGACCAGCT TCGGCCGCCT GCGCCCGCTG
CACACCAACC TGGTGATCTT CGCCTTCGGG GGCTGTGCGC TGTTCGGCAC CAGCTACTAC
GTGGTGCAGC GCACCTGCCA GACCCGGCTG ATCTCCGACA GCATGGCCGC CTTCACCTTC
TGGGGTTGGC AAGCCGTGAT CGTCGGCGCG CTGATCACCC TGCCGATGGG CTACACCACC
ACCAAGGAAT ACGCCGAGCT CGAGTGGCCG CTGGCGATCC TGCTGGCGAT CGTCTGGGTT
ACCTACGGCC TGGTGTTCTT CGGCACCATC GTCAAGCGCA AGACCAAGCA CATTTATGTC
GGCAACTGGT TCTATGGTGC GTTCATCGTG GTCACCGCGA TGCTGCACAT CGTCAACCAC
ATCTCGCTGC CGGTGAGCCT GTTCAAGTCG TACTCGGCCT ACTCCGGCGC CACCGACGCG
ATGATCCAGT GGTGGTACGG CCACAACGCC GTGGGCTTCT TCCTCACCAC CGGTTTCCTG
GGGATGATGT ACTACTTCGT GCCCAAGCAG GCCGAGCGGC CGATCTACTC GTATCGCTTG
TCGATCGTGC ACTTCTGGGC GCTGATCACC CTGTACATCT GGGCTGGCCC GCACCACCTG
CACTACACCG CCCTGCCTGA CTGGGCGCAG TCATTGGGCA TGGTGATGTC GATCATCCTG
CTGGCGCCAA GCTGGGGCGG CATGATCAAC GGCATGATGA CCCTGTCGGG CGCCTGGCAC
AAACTGCGCA CCGACCCGAT CCTGCGCTTC CTGGTGGTGT CTCTGGCGTT CTACGGCATG
TCCACCTTCG AAGGCCCGAT GATGGCCATC AAGACCGTGA ACTCACTGTC GCACTACACC
GACTGGACCA TCGGCCACGT CCACGCTGGC GCCCTCGGCT GGGTGGCAAT GATTTCGATC
GGCGCCGTGT ACCACATGAT CCCGAAACTC TACGGCCGCG AGCAGATGCA CAGCATCGGC
CTGATCAACG CGCACTTCTG GCTGGCCACC ATCGGCACCG TACTGTACAT CGCCTCGATG
TGGGTCAACG GCATCACCCA GGGCCTGATG TGGCGCGCCA TCAACGATGA CGGCACCCTC
ACCTACTCCT TCGTCGAAGC CCTGCAGGCC AGCCACCCCG GCTACATCGT CCGCGCCCTG
GGCGGTGCGT TCTTCGCCAG CGGCATGCTG CTGATGGCCT ACAACGTGTT CCGTACCGTA
CGTGCCGCCA ACCCGGCACA GGCTGAAGAG GCCGCCAAGA TCGTCGTTGT GGGAGCGCAC
TGA
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| Protein sequence | MSTAISPTAY NYKVVRQFAI MTVVWGILGM GLGVFIASQL VWPQLNLDLP WTSFGRLRPL
HTNLVIFAFG GCALFGTSYY VVQRTCQTRL ISDSMAAFTF WGWQAVIVGA LITLPMGYTT
TKEYAELEWP LAILLAIVWV TYGLVFFGTI VKRKTKHIYV GNWFYGAFIV VTAMLHIVNH
ISLPVSLFKS YSAYSGATDA MIQWWYGHNA VGFFLTTGFL GMMYYFVPKQ AERPIYSYRL
SIVHFWALIT LYIWAGPHHL HYTALPDWAQ SLGMVMSIIL LAPSWGGMIN GMMTLSGAWH
KLRTDPILRF LVVSLAFYGM STFEGPMMAI KTVNSLSHYT DWTIGHVHAG ALGWVAMISI
GAVYHMIPKL YGREQMHSIG LINAHFWLAT IGTVLYIASM WVNGITQGLM WRAINDDGTL
TYSFVEALQA SHPGYIVRAL GGAFFASGML LMAYNVFRTV RAANPAQAEE AAKIVVVGAH
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