| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1604 |
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| Symbol | |
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| ID | 5193853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1795130 |
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| End bp | 1796512 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640586074 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001266944 |
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| Protein GI | 148546842 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0967735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0165321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGACG ACCTCCGTTG GGATACCGAC CTGATCCGCC GCTACGATCT CGCCGGGCCA
CGCTACACCT CTTACCCAAC CGCTGTGCAA CTGCACAGAG AGGTGGGTTC GTTCGACCTG
CTCAACGCCC TGCGCGAGAG CCGACGGGCC GTGCGCCCGC TGTCGCTGTA CGTGCATGTG
CCGTTCTGCG CCAACATCTG CTACTACTGC GCCTGCAACA AGGTCATTAC CAAAGACCGT
GCGCGCGCCG CGCCCTACCT GCAGCGCCTG GAGCAGGAAA TCCAGCTGAT CGCCTGCCAC
CTGGACCCTA AACAACGTGT TGAACAGCTG CATTTTGGCG GCGGCACACC GACCTTCCTC
AGCCATGTGG AACTGCGCCA GCTGATGGCC ACCCTGCGCC AGCACTTCCA CCTGCTGGAC
GACGATTCCG GCGACTACGG CATCGAGATC GACCCTCGCG AAGCCGACTG GTCGACCATG
GGCCTGCTTC GCGAACTGGG CTTCAACCGC GTCAGCCTTG GCGTGCAGGA CCTCGACCCG
GCCGTGCAGC GCGCAATCAA CCGCCTGCAG AGCCTGGAGC AGACCCGCAC TTTGATCGAG
GCTGCGCGCA CGCTGCAGTT TCGCTCGGTC AACCTCGACC TGATCTACGG CCTGCCCAAG
CAAACCCCGG AAGGCTTTGC CCGCACCGTG GAAGAAGTGA TCCGCCTGCA GCCCGACCGC
CTGTCGGTGT TCAACTATGC CCACCTTCCC GAGCGCTTCA TGCCGCAACG GCGCATCGAC
AGCAACGATC TGCCCAGCGC GGCCGCCAAG CTGGAGATGC TGCACGCCAC CATCGACCAA
CTGACCGCCG CCGGTTACCG CTACATCGGC ATGGACCACT TCGCCCTGCC CGACGACGAA
CTGGCCATTG CCCAGGAAGA AGGCACCTTG CAGCGCAACT TCCAGGGCTA CACCACCCAC
GGGCACTGCG ACCTGATTGG CCTGGGCGTG TCGGCGATCA GCCAGATCGG CGACCTGTAC
TGCCAGAACA GCAGTGACCT CAACACCTAC CAGGACAGCC TGTCCAACGC CCAGCTGGCT
ACCCAGCGCG GCTTGCTGTG CAACCACGAC GACCGCATAC GCCGGGCAGT GATCCAGCAA
CTGATCTGCC ATTTCGAGCT GGATTTCGAA CCCATCGAAC AGGCTTTCAC CCTGGATTTT
CGCGGCTACT TCAACGACCT CTGGCCCGAG CTGCTGACCT TGCAGCGCGA CGGCCTGATC
AGCCTGGACG ACAAGGGCAT TCGCATCCTG CCCGCCGGCC GGCTGCTGGC GCGCTCGGTA
TGCATGGTGT TCGACGCGTA TCTGGCGATG CACAACCGCC AGCGTTTCTC GCGAGTGATC
TGA
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| Protein sequence | MLDDLRWDTD LIRRYDLAGP RYTSYPTAVQ LHREVGSFDL LNALRESRRA VRPLSLYVHV
PFCANICYYC ACNKVITKDR ARAAPYLQRL EQEIQLIACH LDPKQRVEQL HFGGGTPTFL
SHVELRQLMA TLRQHFHLLD DDSGDYGIEI DPREADWSTM GLLRELGFNR VSLGVQDLDP
AVQRAINRLQ SLEQTRTLIE AARTLQFRSV NLDLIYGLPK QTPEGFARTV EEVIRLQPDR
LSVFNYAHLP ERFMPQRRID SNDLPSAAAK LEMLHATIDQ LTAAGYRYIG MDHFALPDDE
LAIAQEEGTL QRNFQGYTTH GHCDLIGLGV SAISQIGDLY CQNSSDLNTY QDSLSNAQLA
TQRGLLCNHD DRIRRAVIQQ LICHFELDFE PIEQAFTLDF RGYFNDLWPE LLTLQRDGLI
SLDDKGIRIL PAGRLLARSV CMVFDAYLAM HNRQRFSRVI
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