| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1522 |
|---|
| Symbol | |
|---|
| ID | 5194316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1706406 |
|---|
| End bp | 1707209 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640585992 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001266863 |
|---|
| Protein GI | 148546761 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.383522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTC AAAGGCATGA ACATCATGCC AATTACTCGA TTGGTAGCTC TAGTGAGTCT
GTGATACCTT CGCCAGCGCT TTTGACTACA TCGCTTGACC CGGAGAACAT GGTGGCAAAC
TCTCTCGATA GCTTTATCGT TCCTGACAAA CATCGCCATA AAACCGCGAT GGATTATGTA
GTCGAGTCGC TACGCGAAGG CATACTTTCT GGCGCAATAG CCGAAGGTAC GGCTTTGCGC
CAAGAAGAGC TAGCCTCAAA ATTCGGTTTG AGTCGAATGC CGATAAGGGA CGCCATAAGG
CAGTTGGAGG CCGAAGGGCT TGTTACCTAC GAAGTCCATA AAGGGGCCTC TGTAGCGATC
ATGACGATTG AAGACATTGT CGAGATCTAT GATATGCGGA TCATGGCAGA ATGCACCGCC
TTGGACTTTG GTTTTGACAA CATCGTAGAA AATGATCTGG CGCAGATGTA CGAACTCATA
TCTGCCATGG AGCATGCCAC CGACCCGCAC CACCTTAGCG AACTCAATGA AAAATTCCAT
CACTTTCTTT ATTCAAAAGC AAAGCGCCCC AGGTTACTTG CATTAATTAA GTCCCTTCAT
GACTCGGTGG ATCGCCATCT TCGTTTTTTG TTGACAAATC TCGACTATCA CAAGAAATCG
CAACAGGATC ATAAAAGCAT TTTGAGCGCT TGCGCCAAGG GTGATCGCGA AGCCGCCAAG
CAATTTTTAG CCGAGCACCT TGCCGAGGGA CGAGATGCAA TCGTTACGTT TCTTGAGAAG
CGGCGTCGGC AGGACGTGTC ATAA
|
|---|
| Protein sequence | MTAQRHEHHA NYSIGSSSES VIPSPALLTT SLDPENMVAN SLDSFIVPDK HRHKTAMDYV
VESLREGILS GAIAEGTALR QEELASKFGL SRMPIRDAIR QLEAEGLVTY EVHKGASVAI
MTIEDIVEIY DMRIMAECTA LDFGFDNIVE NDLAQMYELI SAMEHATDPH HLSELNEKFH
HFLYSKAKRP RLLALIKSLH DSVDRHLRFL LTNLDYHKKS QQDHKSILSA CAKGDREAAK
QFLAEHLAEG RDAIVTFLEK RRRQDVS
|
|---|
| |