Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1498 |
Symbol | fliF |
ID | 5190445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1683599 |
End bp | 1685377 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640585968 |
Product | flagellar MS-ring protein |
Protein accession | YP_001266839 |
Protein GI | 148546737 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.583587 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGAAG CAGTCGTCGA AAACGCCCCC GCCAAAGCTG GCTCGCCAGC GGCCAAGCCG CCGCTGTTTG GCATGGCGTT TCTGGAAAAC ATCTCGCAGA TGCCCATGCT GCGCCAGATC GGCCTCATGG TCGGCCTGGC GGCCAGCGTG GCCATCGGCT TTGCCGTGGT GCTGTGGTCG CAACAACCCG ATTACCGTCC GTTGTACGGC AGCCTGTCGG GCATGGACAC CAAGCAGGTC ATGGACACCC TGGCCGCTGC TGACATCCCC TATAACGTGG AGCCCAACTC GGGGGCCCTG CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCCGC CGGCGTGGCG CCGAGCGACG GCAATGTCGG CTTCGAGCTG CTCGACAAGG AGCAGGGCCT GGGCACCAGC CAGTTCATGG AAGCCACCCG CTACCGCCGC AGCCTTGAAG GCGAACTGGC CCGTACCGTT TCCAGCCTCA ACAACGTCAA GGCTGCGCGC GTGCACCTGG CCATCCCGAA AAGTTCGGTG TTCGTGCGTG ATGAACGCAA GCCCAGCGCC TCGGTACTGG TCGAGCTGTA CCCAGGCCGT GCACTGGAAG CCGGGCAGGT GATGGCCATC GTCAACCTGG TCGCCACCAG CGTGCCGGAA CTGGATAAGT CCCAGGTCAC CGTCGTCGAT CAGAAAGGCA ACCTGCTGTC CGAACAGATT CAGGATTCCG CGCTGACCCA GGCCGGCAAG CAGTTCGACT ACAGCCGCCG GGTGGAAAGC ATGCTCACCC AGCGTGTGCA CAACATTCTG CTGCCGGTGT TGGGCAACGA CCGCTACAAG GCCGAGGTGT CCGCCGACCT CGACTTCAGC GCGGTCGAGT CCACCTCCGA ACAGTTCAAC CCCGACCAGC CGGCGTTGCG CAGCGAGCAG TCGGTCGACG AACAACGTGC CAGCAGCCAG GGCCCGCAAG GCGTGCCTGG CGCGCTGAGC AACCAACCGC CAGGCGCCGC TTCGGCACCG CAGACCACCG GTGGCGCGGC TACCCCGGCT GCCGCCATTC AGCCTGGCCA ACCGCTGGTG GATGCCAACG GTCAGCAGAT CATGGACCCG GCCACCGGTC AGCCGATGCT CGCGCCGTAC CCGTCAGACA AACGTCAGCA AAGCACCAAG AACTTCGAGC TGGACCGTTC CATCAGCCAC ACCCGCCAGC AGCAGGGGCG CATGACCCGC CTGTCGGTAG CGGTGGTGGT GGACGACCAG GTCAAGATCG ACCCGGCCAC TGGCGATACC ACGCGGGCAC CGTGGGGGGC CGAGGACCTG GCGCGCTTTA CCCGCCTGGT GCAGGACGCA GTCGGCTTCG ATGCCAGCCG TGGCGACAGC GTGACGGTGA TCAACGTGCC GTTCGCCGCC GACCGTGGCG AGGAAATCGC CGATATCGCC TTCTACCAGC AGCCCTGGTT CTGGGATATC GTCAAGCAGG TGCTGGGTGT GGTGTTCATC CTGGTGCTGG TGTTCGGCGT GCTGCGGCCA GTGCTGAACA ACATTACCGG GGGCGGCAAG CAGGCTGCCC CGGACAGCGA CATGGAGCTG GGCGGCATGA TGGGTCTGGA TGGCGAACTG GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGCTGCCTAG CCCGAGCGAG GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTG GCTCAGGTCG TGAAAGACTG GATCAACGCC GATGAGTGA
|
Protein sequence | MAEAVVENAP AKAGSPAAKP PLFGMAFLEN ISQMPMLRQI GLMVGLAASV AIGFAVVLWS QQPDYRPLYG SLSGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV FVRDERKPSA SVLVELYPGR ALEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSEQI QDSALTQAGK QFDYSRRVES MLTQRVHNIL LPVLGNDRYK AEVSADLDFS AVESTSEQFN PDQPALRSEQ SVDEQRASSQ GPQGVPGALS NQPPGAASAP QTTGGAATPA AAIQPGQPLV DANGQQIMDP ATGQPMLAPY PSDKRQQSTK NFELDRSISH TRQQQGRMTR LSVAVVVDDQ VKIDPATGDT TRAPWGAEDL ARFTRLVQDA VGFDASRGDS VTVINVPFAA DRGEEIADIA FYQQPWFWDI VKQVLGVVFI LVLVFGVLRP VLNNITGGGK QAAPDSDMEL GGMMGLDGEL ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKDWINA DE
|
| |