Gene Pput_1498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1498 
SymbolfliF 
ID5190445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1683599 
End bp1685377 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content65% 
IMG OID640585968 
Productflagellar MS-ring protein 
Protein accessionYP_001266839 
Protein GI148546737 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein 
TIGRFAM ID[TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.583587 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAG CAGTCGTCGA AAACGCCCCC GCCAAAGCTG GCTCGCCAGC GGCCAAGCCG 
CCGCTGTTTG GCATGGCGTT TCTGGAAAAC ATCTCGCAGA TGCCCATGCT GCGCCAGATC
GGCCTCATGG TCGGCCTGGC GGCCAGCGTG GCCATCGGCT TTGCCGTGGT GCTGTGGTCG
CAACAACCCG ATTACCGTCC GTTGTACGGC AGCCTGTCGG GCATGGACAC CAAGCAGGTC
ATGGACACCC TGGCCGCTGC TGACATCCCC TATAACGTGG AGCCCAACTC GGGGGCCCTG
CTGGTCAAGG CCGACGACCT CTCCCGTGCG CGCCTGAAAC TGGCAGCCGC CGGCGTGGCG
CCGAGCGACG GCAATGTCGG CTTCGAGCTG CTCGACAAGG AGCAGGGCCT GGGCACCAGC
CAGTTCATGG AAGCCACCCG CTACCGCCGC AGCCTTGAAG GCGAACTGGC CCGTACCGTT
TCCAGCCTCA ACAACGTCAA GGCTGCGCGC GTGCACCTGG CCATCCCGAA AAGTTCGGTG
TTCGTGCGTG ATGAACGCAA GCCCAGCGCC TCGGTACTGG TCGAGCTGTA CCCAGGCCGT
GCACTGGAAG CCGGGCAGGT GATGGCCATC GTCAACCTGG TCGCCACCAG CGTGCCGGAA
CTGGATAAGT CCCAGGTCAC CGTCGTCGAT CAGAAAGGCA ACCTGCTGTC CGAACAGATT
CAGGATTCCG CGCTGACCCA GGCCGGCAAG CAGTTCGACT ACAGCCGCCG GGTGGAAAGC
ATGCTCACCC AGCGTGTGCA CAACATTCTG CTGCCGGTGT TGGGCAACGA CCGCTACAAG
GCCGAGGTGT CCGCCGACCT CGACTTCAGC GCGGTCGAGT CCACCTCCGA ACAGTTCAAC
CCCGACCAGC CGGCGTTGCG CAGCGAGCAG TCGGTCGACG AACAACGTGC CAGCAGCCAG
GGCCCGCAAG GCGTGCCTGG CGCGCTGAGC AACCAACCGC CAGGCGCCGC TTCGGCACCG
CAGACCACCG GTGGCGCGGC TACCCCGGCT GCCGCCATTC AGCCTGGCCA ACCGCTGGTG
GATGCCAACG GTCAGCAGAT CATGGACCCG GCCACCGGTC AGCCGATGCT CGCGCCGTAC
CCGTCAGACA AACGTCAGCA AAGCACCAAG AACTTCGAGC TGGACCGTTC CATCAGCCAC
ACCCGCCAGC AGCAGGGGCG CATGACCCGC CTGTCGGTAG CGGTGGTGGT GGACGACCAG
GTCAAGATCG ACCCGGCCAC TGGCGATACC ACGCGGGCAC CGTGGGGGGC CGAGGACCTG
GCGCGCTTTA CCCGCCTGGT GCAGGACGCA GTCGGCTTCG ATGCCAGCCG TGGCGACAGC
GTGACGGTGA TCAACGTGCC GTTCGCCGCC GACCGTGGCG AGGAAATCGC CGATATCGCC
TTCTACCAGC AGCCCTGGTT CTGGGATATC GTCAAGCAGG TGCTGGGTGT GGTGTTCATC
CTGGTGCTGG TGTTCGGCGT GCTGCGGCCA GTGCTGAACA ACATTACCGG GGGCGGCAAG
CAGGCTGCCC CGGACAGCGA CATGGAGCTG GGCGGCATGA TGGGTCTGGA TGGCGAACTG
GCCAACGACC GCGTCAGCCT GGGTGGCCCG ACAAGCATTC TGCTGCCTAG CCCGAGCGAG
GGTTACGAGG CACAGCTCAA CGCAATCAAA GGCCTGGTGG CCGAAGACCC GGGCCGTGTG
GCTCAGGTCG TGAAAGACTG GATCAACGCC GATGAGTGA
 
Protein sequence
MAEAVVENAP AKAGSPAAKP PLFGMAFLEN ISQMPMLRQI GLMVGLAASV AIGFAVVLWS 
QQPDYRPLYG SLSGMDTKQV MDTLAAADIP YNVEPNSGAL LVKADDLSRA RLKLAAAGVA
PSDGNVGFEL LDKEQGLGTS QFMEATRYRR SLEGELARTV SSLNNVKAAR VHLAIPKSSV
FVRDERKPSA SVLVELYPGR ALEAGQVMAI VNLVATSVPE LDKSQVTVVD QKGNLLSEQI
QDSALTQAGK QFDYSRRVES MLTQRVHNIL LPVLGNDRYK AEVSADLDFS AVESTSEQFN
PDQPALRSEQ SVDEQRASSQ GPQGVPGALS NQPPGAASAP QTTGGAATPA AAIQPGQPLV
DANGQQIMDP ATGQPMLAPY PSDKRQQSTK NFELDRSISH TRQQQGRMTR LSVAVVVDDQ
VKIDPATGDT TRAPWGAEDL ARFTRLVQDA VGFDASRGDS VTVINVPFAA DRGEEIADIA
FYQQPWFWDI VKQVLGVVFI LVLVFGVLRP VLNNITGGGK QAAPDSDMEL GGMMGLDGEL
ANDRVSLGGP TSILLPSPSE GYEAQLNAIK GLVAEDPGRV AQVVKDWINA DE