| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1480 |
|---|
| Symbol | |
|---|
| ID | 5191970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1661548 |
|---|
| End bp | 1662609 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585950 |
|---|
| Product | CDP-glucose 4,6-dehydratase |
|---|
| Protein accession | YP_001266821 |
|---|
| Protein GI | 148546719 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR02622] CDP-glucose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.988255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTA GCTTCTGGTC GGGGCGTCGG GTTTTCCTGA CAGGGCACAG CGGCTTCAAA
GGCGGCTGGC TAGCCCTTTG TCTGCGGGAG ATGGGCGCCG AAGTGTATGG CTACTCGCTG
GCCCCCGATA CCTCGCCCTC GCTTTATGGC AGCGCCAGGC TGGCTGAGTG CGTGGCTGGC
GAGTTTGCCG ATGTTCGTGA TGCTGACCGG TTGCTGCGCA GCGTTGCGGC ATTTCGCCCC
GAGATTGTCC TGCACCTGGC CGCGCAGCCG TTGGTGCGCG AGTCCTATCG CAGCCCGGCG
CAAACATACG CCACCAACGT TATCGGCACG CTCAACCTGC TTGAAGCCGT ACGGAAGTGC
GACGCGGTGC GTGCCGTACT GGTTGTCACC AGTGACAAGT GCTACGAGAA CCGCGAGTGG
CAATGGCCAT ACCGCGAGCA GGATGCCTTG GGGGGGCATG ACCCCTACAG CAGCAGCAAG
GCGTGCGTCG AGCTGCTTTG CGCCTCATGG CGCGAGTCAT TCCTGCGCGA GCGCGGTGTG
GCGCTTGCGA CAGCGCGTGC GGGCAACGTG ATCGGTGGTG GCGACTGGTC AGCAGACCGG
TTGCTGCCCG ATATCCTGCG TGCCTGGGAA GCCGGGGAGT CGGTGACCTT GCGCTATCCC
GATGCCGTGC GCCCGTGGCA GCACGTACTC GACCCGCTTG AGGGCTACCT GCTGCTGGCC
CAGGCGTTGA TCGAGCGTGG TCAGGACGTG GCAGAGGCCT GGAATTTCGG CCCTGACAGC
GGTGGGACGG CAACCGTGGG TGAGTTGGTC CATGCCATGG CGCAGTTGTG GCCAGGCGAA
GCGGGTTGGT CTGTCGACCC GTACGTGCAG CCCCATGAAG CAGGCTTGTT GACCCTTGAC
TCCTCCAGAG CTCGCCAACG CTTGGGCTGG CGGCCCAAGT GGGGCCTGAA GCAATCGTTG
CGTCACACCC TTGAATGGCA TCGCGCCTGG CGCGATGGCC AAGACATGCA GCAATACTGC
CGCACGCAAA TAGCGGCACA CGAAGGTGAG TTCAATGACT GA
|
|---|
| Protein sequence | MSRSFWSGRR VFLTGHSGFK GGWLALCLRE MGAEVYGYSL APDTSPSLYG SARLAECVAG
EFADVRDADR LLRSVAAFRP EIVLHLAAQP LVRESYRSPA QTYATNVIGT LNLLEAVRKC
DAVRAVLVVT SDKCYENREW QWPYREQDAL GGHDPYSSSK ACVELLCASW RESFLRERGV
ALATARAGNV IGGGDWSADR LLPDILRAWE AGESVTLRYP DAVRPWQHVL DPLEGYLLLA
QALIERGQDV AEAWNFGPDS GGTATVGELV HAMAQLWPGE AGWSVDPYVQ PHEAGLLTLD
SSRARQRLGW RPKWGLKQSL RHTLEWHRAW RDGQDMQQYC RTQIAAHEGE FND
|
|---|
| |