Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1431 |
Symbol | |
ID | 5193020 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1605178 |
End bp | 1605876 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640585896 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001266773 |
Protein GI | 148546671 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00987001 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.746207 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCTTCG ACTACAACGT CGTCTGGGAA GCGCTGCCGA TGTACTTCGG CGGTTTGCTG ACCACCCTGA AACTGCTGGC GATTTCGCTT TTCTTCGGCC TGTTGGCAGC CATTCCGCTG GGCCTGATGC GGGTATCCAG GCAGCCGGTG GTCAACCTTG CTGCATGGCT GTACACCTAC GTCATCCGTG GCACGCCGAT GCTGGTGCAG CTGTTCCTGA TCTACTACGG CCTGGCCCAG TTCGAGGCGG TGCGCGAGAG TATCTTCTGG CCGCTGCTGT CCAGCGCCAC CTTCTGCGCC TGCCTGGCGT TCGGCATCAA TACCAGTGCC TACACGGCCG AAATCATTGC CGGCAGCCTC AAGGCGACGC CGCATGGCGA GATCGAAGCT GCCAAGGCCA TGGGGATGTC GCGCATGAAA ATGTACCGCC GCATCCTGCT GCCTTCGGCA CTGCGTCGGG CACTGCCGCA ATACAGCAAT GAAGTGATCA TGATGCTGCA GACCACCAGC CTGGCGTCGA TCGTCACCCT GATCGACATC ACCGGTGCTG CGCGCACGGT CAATGCCCAG TACTACCTGC CTTTCGAGGC CTATATCACG GCGGGCGTGT TCTACCTGTG CCTGACCTTC ATCCTGGTGC GCCTGTTCAA GATGGCCGAA CGCCGCTGGC TCGGCTACCT GGCGCCGCGC AAGCACTGA
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Protein sequence | MIFDYNVVWE ALPMYFGGLL TTLKLLAISL FFGLLAAIPL GLMRVSRQPV VNLAAWLYTY VIRGTPMLVQ LFLIYYGLAQ FEAVRESIFW PLLSSATFCA CLAFGINTSA YTAEIIAGSL KATPHGEIEA AKAMGMSRMK MYRRILLPSA LRRALPQYSN EVIMMLQTTS LASIVTLIDI TGAARTVNAQ YYLPFEAYIT AGVFYLCLTF ILVRLFKMAE RRWLGYLAPR KH
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