Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1416 |
Symbol | |
ID | 5190198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1582583 |
End bp | 1583650 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640585881 |
Product | RNA-binding S4 domain-containing protein |
Protein accession | YP_001266758 |
Protein GI | 148546656 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.504489 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAGC AAGACCTGAA AGAAACCGAA ATCACCCCGC CATCCGGCGA AAAGCTGCAG AAAGTGCTGG CGCGCATTGG CGTGGGCTCG CGGCGTGATG TCGAGGCCTG GATCAGCCAG GGTCGCATCA AGGTCAACGG CGTCGAGGCC ACCCTTGGCC AGCGCGTAGA CCTGCACGAC GCCATCGCCG TGGACGGCAA GCTGATCAAG CGCGAGGAGG CCGCCGAGGC CACCCGCCGG GTGATCATGT ACAACAAGCC CGACGGCGAA ATCTGCACCC GTGACGACCC GGAAGGGCGC CCGACCGTGT TCGACCGTTT GCCACGGCCA AAAGAAGGCC GCTGGATCAA CATCGGCCGC CTCGACATCA ACACCACTGG CTTGCTGCTG TTCACCACCG ACGGTGAGCT GGCCAACCGC CTGATGCACC CGTCCTACGA GATGGACCGT GAGTACGCGG TACGTGTGCG TGGTGAAGTC GACGACGAGA TGATCGAGCG CCTGAAAGCC GGCGTAATGC TGGAAGACGG CCCGGCCAAG TTCACCGATA TCCAGAAGGC ACCGGGTGGC GAAGGCTTCA ACCACTGGTA CCACTGCGTG GTGATGGAAG GTCGTAACCG TGAGGTGCGT CGCCTGTGGG AATCCCAGGG CATGGTGGTC AGCCGCCTGA AGCGTGTGCG TTTCGGCCCG GTGTTCCTCA ATTCGGACCT GCCGATGGGC CGCTGGCGCG AAATGACCCA GGGCGAAATC GACATCCTCG CCGCCGAAGT GGGCTTGCAG CCGGTCGCGC TGCCAGCCAT GAAGCTCAAG GCCAAGGACA AGATGGAGCG CCTGCAGCGC AAGTCGACCC GCCCGCTGGG CCGTGGCGAG CGCGTGCGCA ACCTGCGCCC GGCCCACGAA GGTGCCGCTA CTGGCGAACG CCCTGCGCGT CAGCCGCGTG AAGAAGCGCC GCGTAAACCC ACCCGTGGCA GCACGGTGGC TGAGCGCCCG AGCGAGATGC GCAAGCGTCC GGGCAAACCT GATGGCGACA AGCCGGCAGG CCGTGGTCGC GGCAAGCCGC GTGGCTGA
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Protein sequence | MSEQDLKETE ITPPSGEKLQ KVLARIGVGS RRDVEAWISQ GRIKVNGVEA TLGQRVDLHD AIAVDGKLIK REEAAEATRR VIMYNKPDGE ICTRDDPEGR PTVFDRLPRP KEGRWINIGR LDINTTGLLL FTTDGELANR LMHPSYEMDR EYAVRVRGEV DDEMIERLKA GVMLEDGPAK FTDIQKAPGG EGFNHWYHCV VMEGRNREVR RLWESQGMVV SRLKRVRFGP VFLNSDLPMG RWREMTQGEI DILAAEVGLQ PVALPAMKLK AKDKMERLQR KSTRPLGRGE RVRNLRPAHE GAATGERPAR QPREEAPRKP TRGSTVAERP SEMRKRPGKP DGDKPAGRGR GKPRG
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