Gene Pput_1366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1366 
Symbol 
ID5193678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1535163 
End bp1536041 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content55% 
IMG OID640585831 
ProductLysR family transcriptional regulator 
Protein accessionYP_001266708 
Protein GI148546606 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.320453 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATCTCA AACAACTTGA ATGCTTTGTT CGCGTCGCCG AGTTCGGAGG TTTTACAAAG 
GCATCGGCGA CGCTAAATCT CTCCCAGTCA GTGGTGAGCA GGCAGGTTCG CCAACTAGAG
GTCGAGCTCC AGCAACACCT GCTGCAGCGC AACGGACGGG GCGTGACCCT TACTCCGGCA
GGAGCTCGGC TTTTTGAACA CGGACAAGGC ATCCTGCGGC AACTCCAAGT TGCCCGAGAA
GACCTGCAAG AACAGCGGGA CTCACCCAAC GGCAAAGTAG TAATCGGCTT GCCGCCTAGC
ATCGCTCGGC GCCACACGGT AGGCATCGTT ACAGAGTTTC AGAGACTATT TCCAGGATGC
GCACTAGGAA TCAAGGAAGG GCTTTCTCAC TCGATGAGGG AATGGTTGCT GTTGGGTCGG
CTCGACTTCG CACTGCTGTA CAACCCTGCT CAAAACTCAC AGCTCAGTTT TGAGCCTGTT
CAGTCTGAAC CGCTTTGGCT CGTCAGCTCG GCCAACATGC CACTACCCGC TGAGGTTGAG
CTCAGTACCC TAGGCGACTA TCCACTAATC ATCCCCAGCC AACCTCACTC ATTGCGCAGA
CTCATCGAAT CAGAGGCCGC GAGATACCAA GTTGAATTGA ATGTGAGACT GGAAATCGAC
GGAATATTCT CCCTCCTTGA TTTGGTTGCC ATTGGCGCGG GGCACGCTGT TCTGTCCCAA
GTGGCGCTCG AAGGGCCTTA CGTTCCCCCT GGCTTGCATT CTGCTCCTAT CGTGAATCCC
ACGATCAATA CTCACCTTTT CGTGGCTACT GCTAACCAGA GGCCACTGAC GAGGCTGGCT
GCCCTGACCC TTGGGATGGT GAGGGGTCAG ATGGGATAA
 
Protein sequence
MDLKQLECFV RVAEFGGFTK ASATLNLSQS VVSRQVRQLE VELQQHLLQR NGRGVTLTPA 
GARLFEHGQG ILRQLQVARE DLQEQRDSPN GKVVIGLPPS IARRHTVGIV TEFQRLFPGC
ALGIKEGLSH SMREWLLLGR LDFALLYNPA QNSQLSFEPV QSEPLWLVSS ANMPLPAEVE
LSTLGDYPLI IPSQPHSLRR LIESEAARYQ VELNVRLEID GIFSLLDLVA IGAGHAVLSQ
VALEGPYVPP GLHSAPIVNP TINTHLFVAT ANQRPLTRLA ALTLGMVRGQ MG