Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1366 |
Symbol | |
ID | 5193678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1535163 |
End bp | 1536041 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640585831 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001266708 |
Protein GI | 148546606 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.320453 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATCTCA AACAACTTGA ATGCTTTGTT CGCGTCGCCG AGTTCGGAGG TTTTACAAAG GCATCGGCGA CGCTAAATCT CTCCCAGTCA GTGGTGAGCA GGCAGGTTCG CCAACTAGAG GTCGAGCTCC AGCAACACCT GCTGCAGCGC AACGGACGGG GCGTGACCCT TACTCCGGCA GGAGCTCGGC TTTTTGAACA CGGACAAGGC ATCCTGCGGC AACTCCAAGT TGCCCGAGAA GACCTGCAAG AACAGCGGGA CTCACCCAAC GGCAAAGTAG TAATCGGCTT GCCGCCTAGC ATCGCTCGGC GCCACACGGT AGGCATCGTT ACAGAGTTTC AGAGACTATT TCCAGGATGC GCACTAGGAA TCAAGGAAGG GCTTTCTCAC TCGATGAGGG AATGGTTGCT GTTGGGTCGG CTCGACTTCG CACTGCTGTA CAACCCTGCT CAAAACTCAC AGCTCAGTTT TGAGCCTGTT CAGTCTGAAC CGCTTTGGCT CGTCAGCTCG GCCAACATGC CACTACCCGC TGAGGTTGAG CTCAGTACCC TAGGCGACTA TCCACTAATC ATCCCCAGCC AACCTCACTC ATTGCGCAGA CTCATCGAAT CAGAGGCCGC GAGATACCAA GTTGAATTGA ATGTGAGACT GGAAATCGAC GGAATATTCT CCCTCCTTGA TTTGGTTGCC ATTGGCGCGG GGCACGCTGT TCTGTCCCAA GTGGCGCTCG AAGGGCCTTA CGTTCCCCCT GGCTTGCATT CTGCTCCTAT CGTGAATCCC ACGATCAATA CTCACCTTTT CGTGGCTACT GCTAACCAGA GGCCACTGAC GAGGCTGGCT GCCCTGACCC TTGGGATGGT GAGGGGTCAG ATGGGATAA
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Protein sequence | MDLKQLECFV RVAEFGGFTK ASATLNLSQS VVSRQVRQLE VELQQHLLQR NGRGVTLTPA GARLFEHGQG ILRQLQVARE DLQEQRDSPN GKVVIGLPPS IARRHTVGIV TEFQRLFPGC ALGIKEGLSH SMREWLLLGR LDFALLYNPA QNSQLSFEPV QSEPLWLVSS ANMPLPAEVE LSTLGDYPLI IPSQPHSLRR LIESEAARYQ VELNVRLEID GIFSLLDLVA IGAGHAVLSQ VALEGPYVPP GLHSAPIVNP TINTHLFVAT ANQRPLTRLA ALTLGMVRGQ MG
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