Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1363 |
Symbol | |
ID | 5191256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1531521 |
End bp | 1532747 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640585828 |
Product | outer membrane porin |
Protein accession | YP_001266705 |
Protein GI | 148546603 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.475695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0504292 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCCA AAATGCGCTA CGCCATCTTA CTTGCAGGTA GCACCTCCGT TTCACCACTG CTTGCTGCCG GCTTTTTTGA GGACAGCAAG TCACGTCTAG ACATCAGAAA CTTTTATTAC AACGGTGATT TCCGTGAGGG TACCGCAGTT TCTAAGCGAG AAGAATGGGT GCAAGGATTC CTGTTGCAGT ACGAATCCGG CTTCACTCAG GGGAGTGTAG GTATTGGCGT GGATGCTCTT GGATACCTAG GCATCCGTCT GGACTCAAGT GCTGATCGAA CAGGCAGTGG GCTCGTACCG ACCACAGCAT CAGGTAATGC TGCTCATGAT TACTCCAAAG GTGGGGCAAC GGCAAAGGTT CGGGTGTCCA AAACCGAATT ACGCTATGGG ACTGCTCTCC CAAAAGTTCC AGTTCTGCAG TACAACGGCA GTCGCCTCTT CCCCCAATAC TTTCAAGGTA CACAAATCAG CTCCTCCGAA TTCGAGGGCC TTACGGCAAA TGTGGCACAA TTCAACCGTA CAACTGCACC TGATTCTACC GACCAACAAC ACATAGCATT GGCAGCTAAG AACGGTCGCT ACCCGGCTGT CGGCATTGGT GATCACTTCC GCTACGGCGG GCTAAATTAC AAAATCACCC CAACACTAAC TTTAAGTTAC TACCATGGCG AGTTGGAAAA CGTCTACGAA CAAAACTTCC TGGGTATAAA TAATCGCCAG AAATTCGGCC CAGGGATCCT GGAAATAGAT GTCCGCACAT TCATAAGTGA TGAGGCAGGG GATGCAAAGG CTGGAGGTGT GGACAATCAA ACATATACTG GCCTGATCAG CTATTCTCTT GACAGCGGTC ACAGCCTCCT TGCCACCTAT CAGCATCTAG AAGGAGACAC CGGTTTTCCA TATATAAACA ACCCATACCT GCCAAACTAT GTTCAATATC ATGACTTCGG AGAGGCGGGA GAGAGAAGCT GGCAACTTCG ATACGGTTAT GATTTCAAGC ACATTGGATT AAAGGGGCTA AGTTTATTCA CGGACTACAT TCACGGTTCT CATCTGAATA AGCGAGGCGG AGGTGCCGAA TGGGAGCGTG ACATTGACAT GACCTACGAG ATCCCTGGGG TCAATGGGCT AACACTTAGA TGGCGCAACG CAACCTATCG CAGCGACATT AATCGTGACA TCGACGAGAA CAGGCTGATC CTCAATTACA CAATCGCACT CAAATAA
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Protein sequence | MNSKMRYAIL LAGSTSVSPL LAAGFFEDSK SRLDIRNFYY NGDFREGTAV SKREEWVQGF LLQYESGFTQ GSVGIGVDAL GYLGIRLDSS ADRTGSGLVP TTASGNAAHD YSKGGATAKV RVSKTELRYG TALPKVPVLQ YNGSRLFPQY FQGTQISSSE FEGLTANVAQ FNRTTAPDST DQQHIALAAK NGRYPAVGIG DHFRYGGLNY KITPTLTLSY YHGELENVYE QNFLGINNRQ KFGPGILEID VRTFISDEAG DAKAGGVDNQ TYTGLISYSL DSGHSLLATY QHLEGDTGFP YINNPYLPNY VQYHDFGEAG ERSWQLRYGY DFKHIGLKGL SLFTDYIHGS HLNKRGGGAE WERDIDMTYE IPGVNGLTLR WRNATYRSDI NRDIDENRLI LNYTIALK
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