| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1228 |
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| Symbol | rimO |
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| ID | 5195005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 1390462 |
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| End bp | 1391793 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640585691 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_001266573 |
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| Protein GI | 148546471 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.243595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.945155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCA CGCCCGCCAC CCCCAAGGTA GGTTTCGTAA GCCTGGGTTG CCCAAAAGCC
CTGGTCGACT CCGAGCGCAT CCTGACCCAG CTGCGCATGG AAGGCTATGA AGTCGTACCC
ACCTACGAGG ACGCCGACGT GGTGGTGGTC AACACCTGCG GCTTCATCGA CAGCGCCAAG
GCCGAATCGC TGGAAGTGAT CGGCGAAGCG ATCAAGGAAA ACGGCAAGGT GATCGTCACC
GGCTGCATGG GCGTCGAAGA AGGCAGCATC CGTGACGTGC ACCCAAGCGT GCTGTCGGTC
ACTGGTCCGC AGCAGTACGA GCAGGTAGTC AACGCCGTTC ACGAAGTGGT GCCGCCGCGT
CAGGACCACA ACCCGCTGAT CGACCTGGTG CCGCCACAGG GCGTCAAGCT GACCCCGCGC
CACTATGCCT ACCTGAAGAT CTCCGAAGGC TGCAACCACA GCTGCAGCTT CTGCATCATC
CCGTCGATGC GCGGCAAGCT GGTCAGCCGC CCGGTGGGTG AAGTGCTGAG CGAGGCCGAG
CGCCTGGTCA AGGCCGGGGT GAAGGAAATC CTGGTGATTT CCCAGGACAC CAGCGCCTAC
GGCGTCGACG TCAAGTACAA GACCGACTTC TGGAACGGCC GCCCGGTGAA GACCCGCATG
CTCGAGCTGT GCGAAGCACT GAGCAGCCTG GGCGCCTGGG TCCGCCTGCA CTATGTGTAC
CCTTACCCGA ACGTTGACGA CGTGATCCCG CTGATGGCTG CCGGCAAGAT CCTGCCGTAC
CTGGACATCC CGTTCCAGCA CGCCAGCCCG AAAGTGCTCA AGTCGATGAA GCGCCCGGCC
TTCGAAGACC GCACCCTGGC GCGCATCAAG AACTGGCGCG AGCAGTGCCC TGAGCTGGTG
ATCCGCTCCA CCTTCATCGT CGGCTTCCCG GGCGAGACCG AGGAAGACTT CCAGTACCTG
CTGGACTGGC TGACCGAAGC CCAGCTCGAC CGCGTGGGCT GCTTCCAGTA CTCGCCGGTG
GAAGGCGCCC CGGCCAACGA CCTGGGCTTG GCCGAAGTAC CGGACGACGT CAAGCAAGAG
CGCTGGGACC GCTTCATGGC CCACCAGCAG GCCATCAGTG CTGCCCGCCT GCAATTGCGC
ATCGGCAAGG AAATCGACGT GCTGATCGAC GAAGTCGAGG AACAAGGTTC GGTTGGCCGC
AGCTTCTTCG ATGCACCGGA AATCGATGGC AGCGTGTTCA TCGATGGCGA CCATGGTTTC
AAGCCAGGCG ACAAAGTGCG TTGCCGTGTG GTGGATGCCG ACGAGTACGA CATGTGGGCT
GAACCCATCT AA
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| Protein sequence | MSTTPATPKV GFVSLGCPKA LVDSERILTQ LRMEGYEVVP TYEDADVVVV NTCGFIDSAK
AESLEVIGEA IKENGKVIVT GCMGVEEGSI RDVHPSVLSV TGPQQYEQVV NAVHEVVPPR
QDHNPLIDLV PPQGVKLTPR HYAYLKISEG CNHSCSFCII PSMRGKLVSR PVGEVLSEAE
RLVKAGVKEI LVISQDTSAY GVDVKYKTDF WNGRPVKTRM LELCEALSSL GAWVRLHYVY
PYPNVDDVIP LMAAGKILPY LDIPFQHASP KVLKSMKRPA FEDRTLARIK NWREQCPELV
IRSTFIVGFP GETEEDFQYL LDWLTEAQLD RVGCFQYSPV EGAPANDLGL AEVPDDVKQE
RWDRFMAHQQ AISAARLQLR IGKEIDVLID EVEEQGSVGR SFFDAPEIDG SVFIDGDHGF
KPGDKVRCRV VDADEYDMWA EPI
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