Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1146 |
Symbol | |
ID | 5192457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1294189 |
End bp | 1295205 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640585604 |
Product | RNA procession exonuclease-like protein |
Protein accession | YP_001266491 |
Protein GI | 148546389 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.39024 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCTTG TCATCGCCCG CCCCGAAGGC CTGTACTGCC CGCCCGGAGA TTTCTACATC GACCCCTGGC GGCCCGTGGA CCGGGCTGTC ATTACCCACG GCCACGGCGA CCACGCACGC AGCGGCAATG GCCATTATCT GACCGCCAGC CCCGGTGCCG GCATTCTGCG CAGCCGCCTG GGCCAGGACA TCCATTTGCA GACCCTGCCC TACGGTGAGC GCCTGCTGCA CCAAGGCGTG ACGTTGAGCC TGCACCCGGC CGGGCACGTG CTGGGTTCGG CACAGGTGCG CCTGGAGTAT CGAGGTGAAG TCTGGGTTGC ATCCGGTGAC TACAAGGTAG AACCCGATGG CACCTGTACG CCCTTCGAGC CGGTGGCGTG CCACACCTTC ATCACCGAGT CGACCTTCGG CCTGCCGATC TACCGCTGGC CAAGCCAAAG TGAGATCTTC GCCAGCATCA ATGCCTGGTG GCGGGCCAAC CGTGAACAGG GCAAGGCCAG CGTGCTGTTC TGCTATGCCT TCGGAAAGGC CCAGCGGATT CTGCATGGGC TGGATGCCAG CATCGGCCCG ATCCTCGTGC ATGGCGCCAT GGAGCCGCTC AACCGGGTGT ATCGGGATGC CGGTATCCGC CTGCCGGAAA CCCGCTACGC AGGCGATATA CCGCGCAACG ATCCTCTGCT GCGCCAGGCA CTGGTCCTGG CGCCCCCATC AGCCGGCGGG AGTAGCTGGA TGCGCCGTTT TGGCGATTAC AGTGATGCCT TCGCCAGCGG CTGGATGCTG CTACGCGGCG CCCGCCGACG GCGCGGCGTG GACCGGGGCT TTGTGCTGTC CGACCACGCC GACTGGCCCG GCCTGCTCTG GGCCATTGGC CAGACCGGTG CCCAACGGGT GATGGTCACT CACGGCTCGG TCGAGGTACT GGTGCGCTAC CTCACCGAAC AAGGCCTGGA TGCCCGCGCC TTTGTCACCG AGTATGGCGA CGAAGACGAT GTGCCCAACA CCGCCCCCTC GCCATGA
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Protein sequence | MDLVIARPEG LYCPPGDFYI DPWRPVDRAV ITHGHGDHAR SGNGHYLTAS PGAGILRSRL GQDIHLQTLP YGERLLHQGV TLSLHPAGHV LGSAQVRLEY RGEVWVASGD YKVEPDGTCT PFEPVACHTF ITESTFGLPI YRWPSQSEIF ASINAWWRAN REQGKASVLF CYAFGKAQRI LHGLDASIGP ILVHGAMEPL NRVYRDAGIR LPETRYAGDI PRNDPLLRQA LVLAPPSAGG SSWMRRFGDY SDAFASGWML LRGARRRRGV DRGFVLSDHA DWPGLLWAIG QTGAQRVMVT HGSVEVLVRY LTEQGLDARA FVTEYGDEDD VPNTAPSP
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