Gene Pput_1146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1146 
Symbol 
ID5192457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1294189 
End bp1295205 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content66% 
IMG OID640585604 
ProductRNA procession exonuclease-like protein 
Protein accessionYP_001266491 
Protein GI148546389 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.39024 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTTG TCATCGCCCG CCCCGAAGGC CTGTACTGCC CGCCCGGAGA TTTCTACATC 
GACCCCTGGC GGCCCGTGGA CCGGGCTGTC ATTACCCACG GCCACGGCGA CCACGCACGC
AGCGGCAATG GCCATTATCT GACCGCCAGC CCCGGTGCCG GCATTCTGCG CAGCCGCCTG
GGCCAGGACA TCCATTTGCA GACCCTGCCC TACGGTGAGC GCCTGCTGCA CCAAGGCGTG
ACGTTGAGCC TGCACCCGGC CGGGCACGTG CTGGGTTCGG CACAGGTGCG CCTGGAGTAT
CGAGGTGAAG TCTGGGTTGC ATCCGGTGAC TACAAGGTAG AACCCGATGG CACCTGTACG
CCCTTCGAGC CGGTGGCGTG CCACACCTTC ATCACCGAGT CGACCTTCGG CCTGCCGATC
TACCGCTGGC CAAGCCAAAG TGAGATCTTC GCCAGCATCA ATGCCTGGTG GCGGGCCAAC
CGTGAACAGG GCAAGGCCAG CGTGCTGTTC TGCTATGCCT TCGGAAAGGC CCAGCGGATT
CTGCATGGGC TGGATGCCAG CATCGGCCCG ATCCTCGTGC ATGGCGCCAT GGAGCCGCTC
AACCGGGTGT ATCGGGATGC CGGTATCCGC CTGCCGGAAA CCCGCTACGC AGGCGATATA
CCGCGCAACG ATCCTCTGCT GCGCCAGGCA CTGGTCCTGG CGCCCCCATC AGCCGGCGGG
AGTAGCTGGA TGCGCCGTTT TGGCGATTAC AGTGATGCCT TCGCCAGCGG CTGGATGCTG
CTACGCGGCG CCCGCCGACG GCGCGGCGTG GACCGGGGCT TTGTGCTGTC CGACCACGCC
GACTGGCCCG GCCTGCTCTG GGCCATTGGC CAGACCGGTG CCCAACGGGT GATGGTCACT
CACGGCTCGG TCGAGGTACT GGTGCGCTAC CTCACCGAAC AAGGCCTGGA TGCCCGCGCC
TTTGTCACCG AGTATGGCGA CGAAGACGAT GTGCCCAACA CCGCCCCCTC GCCATGA
 
Protein sequence
MDLVIARPEG LYCPPGDFYI DPWRPVDRAV ITHGHGDHAR SGNGHYLTAS PGAGILRSRL 
GQDIHLQTLP YGERLLHQGV TLSLHPAGHV LGSAQVRLEY RGEVWVASGD YKVEPDGTCT
PFEPVACHTF ITESTFGLPI YRWPSQSEIF ASINAWWRAN REQGKASVLF CYAFGKAQRI
LHGLDASIGP ILVHGAMEPL NRVYRDAGIR LPETRYAGDI PRNDPLLRQA LVLAPPSAGG
SSWMRRFGDY SDAFASGWML LRGARRRRGV DRGFVLSDHA DWPGLLWAIG QTGAQRVMVT
HGSVEVLVRY LTEQGLDARA FVTEYGDEDD VPNTAPSP