| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1080 |
|---|
| Symbol | |
|---|
| ID | 5191746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 1218017 |
|---|
| End bp | 1218778 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640585538 |
|---|
| Product | Sec-independent protein translocase, TatC subunit |
|---|
| Protein accession | YP_001266425 |
|---|
| Protein GI | 148546323 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.557784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTG CCATGGACCC TGCCGCGAAC ATGCCCCTGA CCGAACACCT GCGCGACCTG
CGCAAACGCC TGGTGCGTTG CCTGGCGCTG GTGGCATTGG TGTTCGCCGG CCTGTTCCCC
TTTGCCCAGA CGCTGTACAC GCTCATATCC GAGCCGCTAC GGCGCTTTTT GCCGGAAGGC
GCGAGCATGA TCGCCACCAG CGTCACCTCG CCCTTTCTGG CACCGTTCAA GCTGACCGCG
ATGTGCGCCC TGTTCCTGGC CATGCCGCTG CTGCTGCATC AGGCCTGGGG CTTTCTGGCG
CCGGGGCTGT ACCGCCGTGA ACGGCGCATT GCCCTGCCGC TGCTGGTATC GAGCATCGTT
TTGTTCTATG CCGGCATGGC GTTCGCGTTC TTTCTGGTGT TCCCGATGAT GTTCGGTTTC
TTTGCCAGCG TGACGCCGGA CGGCGTGGCG ATGATGACCG ATATCAGCCA GTACCTGGAC
TTTATCCTGG CGCTGTTTCT GGCCTTCGGG CTGGCGTTCG AGATCCCGGT GGCGACGTTC
ATCGTGGTCT GGGCAGGGTT GGCCGATGTG GCCACATTGC GGCGCAGCAG GCCCTACGTG
GTCGTCGGGT GCTTTGTGGT GGGGATGATC CTGACACCGC CGGATGTGTT TTCGCAGACG
ATGCTGGCAG TGCCGATGTG GGTGCTGTTC GAGGTGGGGT TGCTGGCTTG TGGAATGTTG
AAGCGGCCGG AGCCAGGCAA GGAGATTGTG GCTGGATTGT AG
|
|---|
| Protein sequence | MSIAMDPAAN MPLTEHLRDL RKRLVRCLAL VALVFAGLFP FAQTLYTLIS EPLRRFLPEG
ASMIATSVTS PFLAPFKLTA MCALFLAMPL LLHQAWGFLA PGLYRRERRI ALPLLVSSIV
LFYAGMAFAF FLVFPMMFGF FASVTPDGVA MMTDISQYLD FILALFLAFG LAFEIPVATF
IVVWAGLADV ATLRRSRPYV VVGCFVVGMI LTPPDVFSQT MLAVPMWVLF EVGLLACGML
KRPEPGKEIV AGL
|
|---|
| |