| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_1053 |
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| Symbol | |
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| ID | 5193988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 1184494 |
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| End bp | 1185780 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640585511 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001266398 |
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| Protein GI | 148546296 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00219882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCCA CGCTCCGTCT CGCTGCCGCA ATCTCTCTGG CTTCTTTACT TCCTTTGGGG
GCTTCGGCTG CCGAATCCAA AGGCAGTGTC GAGGTCGTGC ACTGGTGGAC CTCTGGCGGT
GAAAAGGCGG CGGTCGATGT GCTCAAGGCG CAGGTCGAGA AAGACGGCTT CACCTGGAAG
GACGGCGCTG TTGCCGGTGG TGGTGGTGCC ACGGCCATGA CCGTGCTGAA AAGCCGCGCC
GTCGCAGGCA ACCCGCCCGG TGTCGCGCAG ATCAAAGGCC CCGACATCCA GGACTGGGCG
GCCACCGGCT TGCTTGATGC CGATGTGCTC AAGGATGTGG CCAAGGCCGA AAAGTGGGAC
TCGCTGCTCG ACAAGAAAGT GGCCGACACC GTGAAGTACG ACGGTGATTA CGTTGCTGTA
CCGGTGAACA TCCACCGCAT CAACTGGTTG TGGATCAACC CCGAGGTGTT CAAAAAAGCC
GGCATCGACA AGGCGCCTAC CACCCTCGAC GAATTCTACG CCGCCGCCGA CAAGCTCAAG
GCGGCCGGCT TCATCCCGCT GGCTCATGGT GGCCAACCCT GGCAGGACAG CACCGTATTC
GAAAGCGTGG TGCTGTCGGT GATGGGCGTC GATGGCTACA AGAAGGCCTT GGTCGACCTC
GACAGTGCAA CGCTGACCGG GCCGCAGATG GTCAAGGCGC TGACCGAGCT GAAAAAGGTC
GCCACCTACA TGGACCCGGA CGGCAAGGGC CAGGACTGGA ACCTGGAAGC CGCCAAGGTC
ATCAACGGTA AGGCCGGCAT GCAGATCATG GGCGACTGGG CCAAGAGCGA ATGGACCCTG
GCGAAGAAAA CCGCCGGCAA GGATTACCAG TGCGTGCCGT TCCCCGGTAC CGACAAGGCC
TTCCTGTACA ACATCGACTC GCTGGTGGTG TTCAAACAGA ACAACGCCGG CACCTCTGCC
GGGCAGCAGG ACATCGCGCG CAAAGTGCTG GGGGAGGACT TCCAGAAGGT CTTCAGCATC
AACAAAGGGT CGATCCCGGT GCGTAACGAC ATGCTCGCCG ACATGGGCAA GCACGGTTTC
GATGCCTGCG CGCAAACCTC CGCCAAGGAC TTCCTTGCCG ATGCCAAGAC CGGCGGCCTG
CAGCCGAGCA TGGCGCACAA CATGGCCACC ACGCTGGCTG TGCAGGGTGC GTTCTTCGAT
GTGGTGACCA ACTACATCAA CGACCCCAAG GCCGACCCGG CCGATGCGGC GAAGAAGCTG
GCGGCGGCGA TCAAGGCTGC CCAGTAA
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| Protein sequence | MNSTLRLAAA ISLASLLPLG ASAAESKGSV EVVHWWTSGG EKAAVDVLKA QVEKDGFTWK
DGAVAGGGGA TAMTVLKSRA VAGNPPGVAQ IKGPDIQDWA ATGLLDADVL KDVAKAEKWD
SLLDKKVADT VKYDGDYVAV PVNIHRINWL WINPEVFKKA GIDKAPTTLD EFYAAADKLK
AAGFIPLAHG GQPWQDSTVF ESVVLSVMGV DGYKKALVDL DSATLTGPQM VKALTELKKV
ATYMDPDGKG QDWNLEAAKV INGKAGMQIM GDWAKSEWTL AKKTAGKDYQ CVPFPGTDKA
FLYNIDSLVV FKQNNAGTSA GQQDIARKVL GEDFQKVFSI NKGSIPVRND MLADMGKHGF
DACAQTSAKD FLADAKTGGL QPSMAHNMAT TLAVQGAFFD VVTNYINDPK ADPADAAKKL
AAAIKAAQ
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