Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0936 |
Symbol | |
ID | 5194552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 1060922 |
End bp | 1062445 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640585394 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
Protein accession | YP_001266281 |
Protein GI | 148546179 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTGA TCAAGCAAGA CGACCTGATT CAGAGCGTCG CCGACGCCCT GCAATTCATC TCGTACTACC ACCCCGTCGA TTTCATCCAG GCCATGCACG AGGCCTATCT GCGTGAGGAA TCGCCTGCTG CACGCGATTC CATCGCCCAG ATCCTGATCA ACTCGCGCAT GTGCGCCACC GGCCATCGTC CAATCTGCCA GGACACCGGT ATCGTCACCG TGTTCATCCG CGTGGGCATG GACGTGCGCT GGGATGGCGC CACCATGAGC GTCGACGACA TGATCAACGA AGGTGTGCGT CGCGCCTACA ACCTGCCTGA AAACGTCCTG CGCGCTTCGA TCCTGGCCGA CCCGGCCGGT GCCCGCAAGA ACACCAAGGA CAACACCCCG GCAGTGATCC ACTACTCCAT CGTCCCCGGC GACAAGGTGG AAGTCGATGT CGCAGCCAAG GGCGGCGGCT CGGAAAACAA GTCGAAGATG GCCATGCTCA ACCCGTCCGA CTCGATCGTC GACTGGGTAC TGAAGACCGT GCCGACCATG GGTGCTGGCT GGTGCCCGCC TGGCATGCTC GGCATCGGCA TCGGCGGTAC CGCCGAGAAG GCCGCGGTCA TGGCCAAGGA AGTGTTGATG GAGTCCATCG ACATTCACGA ACTGAAAGCC CGTGGCCCAC AGAACCGCCT GGAAGAAATC CGCCTGGAGC TGTTCGACAA AGTCAACCAG CTGGGCATCG GCGCCCAGGG CCTGGGTGGC CTGACCACCG TGCTCGACGT CAAGATCATG GATTACCCGA CCCACGCGGC GTCCTTGCCG GTGTGCATGA TCCCCAACTG CGCCGCTACC CGCCACGCCC ACTTCGTGCT TGATGGCACC GGCCCGGCAG AACTGGAAGC GCCGTCGCTG GACGCCTACC CGGAAATCGT CTGGGAAGCC GGCCCAAGCG CCCGTCGCGT CAACCTCGAC GACATTACTC CGGAAGAAGT GGCCAGCTGG AAGCCGGGCG AAACCATCCT GCTCAACGGC AAGATGCTGA CCGGCCGCGA TGCCGCGCAC AAGCGCATGG TTGAAATGCT CAACCGTGGC GAAGCGTTGC CGGTAGACCT GAAAGGCCGC TTCATCTACT ACGTCGGCCC GGTCGACCCG GTGGGTGACG AAGTGGTAGG CCCAGCCGGC CCGACCACTG CTACCCGTAT GGACAAGTTC ACCCGCCAGA TCCTTGAGCA GACTGGCCTG CTGGGCATGA TCGGCAAGTC CGAGCGTGGC CCGACCGCCA TCGAGGCGAT CAAGGACAAC AAGGCCGTGT ACCTGATGGC TGTTGGCGGC GCTGCCTACC TGGTCGCCCA GGCCATCCGC AAGTCGAAGG TATTGGCCTT CGCCGAGCTG GGCATGGAAG CGATCTACGA GTTCGAGGTC AAGGACATGC CGGTGACCGT CGCTGTGGAC AGCAACGGCG AGTCGGTACA CATCACTGGC CCTGCCCTGT GGCAGAGCAA GATTGCCGAA AGCCTGGCCG TCGAAGTGAA GTAA
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Protein sequence | MTVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSIAQ ILINSRMCAT GHRPICQDTG IVTVFIRVGM DVRWDGATMS VDDMINEGVR RAYNLPENVL RASILADPAG ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM GAGWCPPGML GIGIGGTAEK AAVMAKEVLM ESIDIHELKA RGPQNRLEEI RLELFDKVNQ LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGT GPAELEAPSL DAYPEIVWEA GPSARRVNLD DITPEEVASW KPGETILLNG KMLTGRDAAH KRMVEMLNRG EALPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG PTAIEAIKDN KAVYLMAVGG AAYLVAQAIR KSKVLAFAEL GMEAIYEFEV KDMPVTVAVD SNGESVHITG PALWQSKIAE SLAVEVK
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