Gene Pput_0936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0936 
Symbol 
ID5194552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1060922 
End bp1062445 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content63% 
IMG OID640585394 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 
Protein accessionYP_001266281 
Protein GI148546179 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTGA TCAAGCAAGA CGACCTGATT CAGAGCGTCG CCGACGCCCT GCAATTCATC 
TCGTACTACC ACCCCGTCGA TTTCATCCAG GCCATGCACG AGGCCTATCT GCGTGAGGAA
TCGCCTGCTG CACGCGATTC CATCGCCCAG ATCCTGATCA ACTCGCGCAT GTGCGCCACC
GGCCATCGTC CAATCTGCCA GGACACCGGT ATCGTCACCG TGTTCATCCG CGTGGGCATG
GACGTGCGCT GGGATGGCGC CACCATGAGC GTCGACGACA TGATCAACGA AGGTGTGCGT
CGCGCCTACA ACCTGCCTGA AAACGTCCTG CGCGCTTCGA TCCTGGCCGA CCCGGCCGGT
GCCCGCAAGA ACACCAAGGA CAACACCCCG GCAGTGATCC ACTACTCCAT CGTCCCCGGC
GACAAGGTGG AAGTCGATGT CGCAGCCAAG GGCGGCGGCT CGGAAAACAA GTCGAAGATG
GCCATGCTCA ACCCGTCCGA CTCGATCGTC GACTGGGTAC TGAAGACCGT GCCGACCATG
GGTGCTGGCT GGTGCCCGCC TGGCATGCTC GGCATCGGCA TCGGCGGTAC CGCCGAGAAG
GCCGCGGTCA TGGCCAAGGA AGTGTTGATG GAGTCCATCG ACATTCACGA ACTGAAAGCC
CGTGGCCCAC AGAACCGCCT GGAAGAAATC CGCCTGGAGC TGTTCGACAA AGTCAACCAG
CTGGGCATCG GCGCCCAGGG CCTGGGTGGC CTGACCACCG TGCTCGACGT CAAGATCATG
GATTACCCGA CCCACGCGGC GTCCTTGCCG GTGTGCATGA TCCCCAACTG CGCCGCTACC
CGCCACGCCC ACTTCGTGCT TGATGGCACC GGCCCGGCAG AACTGGAAGC GCCGTCGCTG
GACGCCTACC CGGAAATCGT CTGGGAAGCC GGCCCAAGCG CCCGTCGCGT CAACCTCGAC
GACATTACTC CGGAAGAAGT GGCCAGCTGG AAGCCGGGCG AAACCATCCT GCTCAACGGC
AAGATGCTGA CCGGCCGCGA TGCCGCGCAC AAGCGCATGG TTGAAATGCT CAACCGTGGC
GAAGCGTTGC CGGTAGACCT GAAAGGCCGC TTCATCTACT ACGTCGGCCC GGTCGACCCG
GTGGGTGACG AAGTGGTAGG CCCAGCCGGC CCGACCACTG CTACCCGTAT GGACAAGTTC
ACCCGCCAGA TCCTTGAGCA GACTGGCCTG CTGGGCATGA TCGGCAAGTC CGAGCGTGGC
CCGACCGCCA TCGAGGCGAT CAAGGACAAC AAGGCCGTGT ACCTGATGGC TGTTGGCGGC
GCTGCCTACC TGGTCGCCCA GGCCATCCGC AAGTCGAAGG TATTGGCCTT CGCCGAGCTG
GGCATGGAAG CGATCTACGA GTTCGAGGTC AAGGACATGC CGGTGACCGT CGCTGTGGAC
AGCAACGGCG AGTCGGTACA CATCACTGGC CCTGCCCTGT GGCAGAGCAA GATTGCCGAA
AGCCTGGCCG TCGAAGTGAA GTAA
 
Protein sequence
MTVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSIAQ ILINSRMCAT 
GHRPICQDTG IVTVFIRVGM DVRWDGATMS VDDMINEGVR RAYNLPENVL RASILADPAG
ARKNTKDNTP AVIHYSIVPG DKVEVDVAAK GGGSENKSKM AMLNPSDSIV DWVLKTVPTM
GAGWCPPGML GIGIGGTAEK AAVMAKEVLM ESIDIHELKA RGPQNRLEEI RLELFDKVNQ
LGIGAQGLGG LTTVLDVKIM DYPTHAASLP VCMIPNCAAT RHAHFVLDGT GPAELEAPSL
DAYPEIVWEA GPSARRVNLD DITPEEVASW KPGETILLNG KMLTGRDAAH KRMVEMLNRG
EALPVDLKGR FIYYVGPVDP VGDEVVGPAG PTTATRMDKF TRQILEQTGL LGMIGKSERG
PTAIEAIKDN KAVYLMAVGG AAYLVAQAIR KSKVLAFAEL GMEAIYEFEV KDMPVTVAVD
SNGESVHITG PALWQSKIAE SLAVEVK