Gene Pput_0790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0790 
Symbol 
ID5195411 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp879831 
End bp880796 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content69% 
IMG OID640585250 
Productglycerate dehydrogenase 
Protein accessionYP_001266138 
Protein GI148546036 
COG category[H] Coenzyme transport and metabolism
[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.356534 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAGCC CGCGTCGCGC CGTGTTTCTC GATCACCAGT CCCTGGACCT TGGCGACCTC 
GACCTTTCGC CCCTGAAGCA GCAGTTCGAC CAGTTCGAAC TGTTCGCCGC CACCCGCCCG
GAACAGGTCG CGGAACGCTT GCAGGGCGCC GTGGCAGTGG TCAGCAACAA AGTCATGCTC
GACGCCGCTA CCCTGGCTGC CAACCCGCAA CTGAAGCTGA TCCTGGTGGC CGCCACCGGC
ACCAACAATG TCGACCTGGC CGCCGCCCGC GCCCAGGGCA TCACCGTGTG TAACTGCCAG
GGCTACGGCA CGCCGTCTGT CGCCCAGCAT ACCCTGGCCC TGCTGTTGGC CCTGGCCACT
CGGCTGTGCG ACTACAACCA GGCGGTGGCC GATGGCCAGT GGGCCAAGGC CAGCCAGTTC
TGCCTGCTGG ACTTTCCTAT CGTCGAACTG GAGGGCAAAA CCCTCGGCCT GCTTGGCCAC
GGTGAACTGG GCGGCGCAGT GGCGAGGCTG GCCGAAGCCT TCGGTATGCG TGTGCTGAGC
GGGCAGATCC CTGGCCGCCC GGAGCGCGCC GACCGGCTGC CGCTGGACGA GTTGCTGCCG
CAAGTCGATG CCCTGACCCT GCACTGCCCG CTGAACGAGC ACACCCGGCA TATGCTCGGT
GCCCGCGAAC TGGCCCTGCT CAAGCCCAAC GCGCTGGTGG TCAACACCGC CCGTGGCGGC
CTGATCGACG AACAGGCGTT GGCCGATGCC CTGCGCGGTG GTCACTTGGG CGGCGCGGCG
ACCGACGTGC TGAGCGTGGA GCCGCCGGTC AACGGCAACC CGCTGCTGGA GCCCGGCATC
CCGCGCCTGA TCATCACCCC GCACAGCGCC TGGGGTGCCG TAGAGTCGCG CCAGCGCATC
GTCGGCCAGC TCAGTGAGAA CGCCCAGGCC TTCTTCGCCG GGCAGCCACG CCGCGTGGTC
AGCTGA
 
Protein sequence
MPSPRRAVFL DHQSLDLGDL DLSPLKQQFD QFELFAATRP EQVAERLQGA VAVVSNKVML 
DAATLAANPQ LKLILVAATG TNNVDLAAAR AQGITVCNCQ GYGTPSVAQH TLALLLALAT
RLCDYNQAVA DGQWAKASQF CLLDFPIVEL EGKTLGLLGH GELGGAVARL AEAFGMRVLS
GQIPGRPERA DRLPLDELLP QVDALTLHCP LNEHTRHMLG ARELALLKPN ALVVNTARGG
LIDEQALADA LRGGHLGGAA TDVLSVEPPV NGNPLLEPGI PRLIITPHSA WGAVESRQRI
VGQLSENAQA FFAGQPRRVV S