| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0637 |
|---|
| Symbol | |
|---|
| ID | 5193742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 714685 |
|---|
| End bp | 716178 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640585089 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001265989 |
|---|
| Protein GI | 148545887 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000149078 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.27415 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTG TTCAGCACCT GATTCACGGC GAACTGGTTA CCAAGGGTGA GCGCACCGCC
GATGTCTTCA ACCCGTCCAC TGGCCAGGCC GTTCGCAAGG TCGAACTGGC CAGCCGCGCA
ACCGTGCAGG AAGCGATCGA CTCGGCCAAG GCAGCCTTCC CGGCCTGGCG CAACACCCCT
CCGGCCAAGC GCGCCCAGGT GATGTTCCGC TTCAAGCAAC TGCTGGAGCA GAACGAAGCC
AAGATTTCGC AGATGATCAG CGAAGAGCAC GGCAAGACCC TGGAAGACGC CGCCGGTGAA
CTGAAGCGTG GTATCGAGAA CGTCGAGTTC GCGTGTGCAG CCCCTGAAGT GCTGAAGGGT
GAGTACAGCC GCAACGTCGG TCCGAACATC GACGCCTGGT CCGACTTCCA GCCGCTGGGC
GTGGTTGCCG GTATCACCCC ATTCAACTTC CCGGCCATGG TGCCGCTGTG GATGTACCCG
CTGGCCATCG CCTGCGGCAA CGCATTCATC CTCAAGCCTT CCGAGCGTGA CCCGAGCTCG
ACCCTGTACA TTGCCCAGTT GCTGCTGGAA GCCGGCCTGC CGAAGGGCAT CCTGAACGTC
GTGCACGGTG ACAAGGAAGC GGTGGATGCG CTGATCGAAG CGCCGGAAGT CAAAGCACTG
AGCTTCGTGG GCTCGACCCC GATCGCCGAG TACATCTATG CCGAAGGCAC CAAGCGTGGC
AAGCGTGTAC AAGCCCTGGG GGGCGCGAAG AACCACGCGG TGCTGATGCC GGATGCCGAC
CTGGACAACG CCGTCAGTGC ACTGATGGGC GCGGCTTACG GTTCGTGTGG CGAGCGTTGC
ATGGCCATTT CGGTCGCCGT GTGCGTAGGC GACCAAGTGG CCGATGCCCT GATTGCCAAG
CTGGAGCCAC AGATCAAGGC GCTGAAGATT GGTGCCGGCA CCTCGTGCGG CCTGGACATG
GGCCCGCTGG TGACTGCGGC AGCGCGTGAC AAGGTCGTGG GTTACATCGA TGACGGTGTT
GCTGCTGGCG CCAAGCTGGT GGTGGATGGC CGTGGTTTCC GAGTGGCGGG TAATGAAGAT
GGCTACTTTG TGGGTGGCAC CCTGTTCGAC AAGGTGACCC CGGAGATGCG CATCTATAAA
GAGGAGATCT TTGGCCCGGT GCTGTGCGTG GTCCGTGTGA ATAGCCTGGA GCAGGCCATG
CAGCTGATCA ACGATCACGA GTATGGCAAC GGCACCTGCA TCTTTACGCG TGACGGTGAA
GCGGCCCGTC TGTTCTGCGA CGAGATCGAA GTGGGTATGG TGGGTGTGAA CGTACCGCTG
CCGGTGCCGG TGGCCTATCA CAGCTTTGGT GGCTGGAAGC GTTCGCTGTT TGGTGATCTG
CATGCCTATG GCCCGGATGG TGTGCGCTTC TATACCCGTC GCAAGGCAAT TACCCAGCGT
TGGCCTCAGC GGGCCAGCCA TGAAGCGTCG CAGTTTGCAT TCCCTAGCCT TTAA
|
|---|
| Protein sequence | MSIVQHLIHG ELVTKGERTA DVFNPSTGQA VRKVELASRA TVQEAIDSAK AAFPAWRNTP
PAKRAQVMFR FKQLLEQNEA KISQMISEEH GKTLEDAAGE LKRGIENVEF ACAAPEVLKG
EYSRNVGPNI DAWSDFQPLG VVAGITPFNF PAMVPLWMYP LAIACGNAFI LKPSERDPSS
TLYIAQLLLE AGLPKGILNV VHGDKEAVDA LIEAPEVKAL SFVGSTPIAE YIYAEGTKRG
KRVQALGGAK NHAVLMPDAD LDNAVSALMG AAYGSCGERC MAISVAVCVG DQVADALIAK
LEPQIKALKI GAGTSCGLDM GPLVTAAARD KVVGYIDDGV AAGAKLVVDG RGFRVAGNED
GYFVGGTLFD KVTPEMRIYK EEIFGPVLCV VRVNSLEQAM QLINDHEYGN GTCIFTRDGE
AARLFCDEIE VGMVGVNVPL PVPVAYHSFG GWKRSLFGDL HAYGPDGVRF YTRRKAITQR
WPQRASHEAS QFAFPSL
|
|---|
| |