Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0628 |
Symbol | |
ID | 5190655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 706243 |
End bp | 707424 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640585080 |
Product | Bcr/CflA subfamily drug resistance transporter |
Protein accession | YP_001265980 |
Protein GI | 148545878 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00837231 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.960264 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGC GAATGGTGCT CATCCTGGGC GCACTCAGTG CGTTCGGGCC CCTGGCGATC GACTTTTACC TGCCAGCCTT CCCGGCCATG GCGCAAGCGT TCGCCACCGA TGAAAAACAC GTCCAGGCCA CGTTGGCCGC CTACTTCCTG GGCCTGTCTA TCGGGCAGTT GGCCTATGGG CCGGTTGCCG ACCGCTTTGG CCGACGCAAA CCGCTGATGT TCGGCGTTAC GCTGTTCACC TTGGCATCAC TGGCCTGTGC CTACGCCCCC AACCTCGATA CCTTGGTGGT GGCGCGTTTC ATCCAGGCAC TGGGTGGTTG TGCCGGCATG GTGCTTTCGC GGGCCATCGT CAGCGACAAG TGCGACCCGG TAGCTTCAGC CAAAGTGTTT TCGCAACTGA TGCTGGTCAT GGGCTTGGCG CCGATCCTGG CACCGATGCT GGGTGGGGTG CTGGTGAACC TGGCCGGCTG GCAGTCGATC TTCCTTGCGC TGAGCCTGTT CAGTGCCGGC TGCCTGCTGG CGGTAAGCCT GGGCCTGCCG GAAAGCCTGC CCGAGCATAT ACCCCGGCAA CCGCTGTCTG GCGCCTTGCG CCAGTACCTG CGGCTGCTGG CTGACCGGGT TTTCCTCGGC CATGCCCTGA CCGGCGGTAT CGCCATTGCC GGCATGTTTG CCTATATCGC CGGTTCACCT TTCGTGTTCA TCAAACTGTA TGGCGTGCCC GCTGAGCACT ACGGCTGGCT GTTCGGCACC AACGCCGCAG GTTTTATTCT GGTGGCGCAG GTGAACGCCC GCCTGCTGGC CAAACGCGGG CCGGCCTTCC TGCTGGGCCG TGCGGTGTGG CTGTATCTGG TTGCGGGCCT GGTGCTGCTG GGCGTGGCGG CGTTGCGCCC TGCGCAACTG TGGCCGCTAC TGGTGCCGCT GTTCATCTGT ATCGCCAGCC TTGGTTGCAT CATTCCCAAT GCTTCGGCCT GCGCCATGAG TGGACAGGGC GCGCGTGCCG GCAGCGCCTC GGCACTGATG GGCTGTGTGC AGTTCAGCGT AGCTGCGGGT GCTGCGGCGC TGGTCGGGCT GCTGCATGAT GGCAGTGCGG TGCCCATGGC AATCGTGATC AGCCTGTGCG GGGCGCTGGT GGTCAGTGTT GCGCTGTTGA CCCGGCGTTT GCAGGCCAAG GCTCCCGCAT GA
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Protein sequence | MNLRMVLILG ALSAFGPLAI DFYLPAFPAM AQAFATDEKH VQATLAAYFL GLSIGQLAYG PVADRFGRRK PLMFGVTLFT LASLACAYAP NLDTLVVARF IQALGGCAGM VLSRAIVSDK CDPVASAKVF SQLMLVMGLA PILAPMLGGV LVNLAGWQSI FLALSLFSAG CLLAVSLGLP ESLPEHIPRQ PLSGALRQYL RLLADRVFLG HALTGGIAIA GMFAYIAGSP FVFIKLYGVP AEHYGWLFGT NAAGFILVAQ VNARLLAKRG PAFLLGRAVW LYLVAGLVLL GVAALRPAQL WPLLVPLFIC IASLGCIIPN ASACAMSGQG ARAGSASALM GCVQFSVAAG AAALVGLLHD GSAVPMAIVI SLCGALVVSV ALLTRRLQAK APA
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