Gene Pput_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0628 
Symbol 
ID5190655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp706243 
End bp707424 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content64% 
IMG OID640585080 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_001265980 
Protein GI148545878 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00837231 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.960264 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC GAATGGTGCT CATCCTGGGC GCACTCAGTG CGTTCGGGCC CCTGGCGATC 
GACTTTTACC TGCCAGCCTT CCCGGCCATG GCGCAAGCGT TCGCCACCGA TGAAAAACAC
GTCCAGGCCA CGTTGGCCGC CTACTTCCTG GGCCTGTCTA TCGGGCAGTT GGCCTATGGG
CCGGTTGCCG ACCGCTTTGG CCGACGCAAA CCGCTGATGT TCGGCGTTAC GCTGTTCACC
TTGGCATCAC TGGCCTGTGC CTACGCCCCC AACCTCGATA CCTTGGTGGT GGCGCGTTTC
ATCCAGGCAC TGGGTGGTTG TGCCGGCATG GTGCTTTCGC GGGCCATCGT CAGCGACAAG
TGCGACCCGG TAGCTTCAGC CAAAGTGTTT TCGCAACTGA TGCTGGTCAT GGGCTTGGCG
CCGATCCTGG CACCGATGCT GGGTGGGGTG CTGGTGAACC TGGCCGGCTG GCAGTCGATC
TTCCTTGCGC TGAGCCTGTT CAGTGCCGGC TGCCTGCTGG CGGTAAGCCT GGGCCTGCCG
GAAAGCCTGC CCGAGCATAT ACCCCGGCAA CCGCTGTCTG GCGCCTTGCG CCAGTACCTG
CGGCTGCTGG CTGACCGGGT TTTCCTCGGC CATGCCCTGA CCGGCGGTAT CGCCATTGCC
GGCATGTTTG CCTATATCGC CGGTTCACCT TTCGTGTTCA TCAAACTGTA TGGCGTGCCC
GCTGAGCACT ACGGCTGGCT GTTCGGCACC AACGCCGCAG GTTTTATTCT GGTGGCGCAG
GTGAACGCCC GCCTGCTGGC CAAACGCGGG CCGGCCTTCC TGCTGGGCCG TGCGGTGTGG
CTGTATCTGG TTGCGGGCCT GGTGCTGCTG GGCGTGGCGG CGTTGCGCCC TGCGCAACTG
TGGCCGCTAC TGGTGCCGCT GTTCATCTGT ATCGCCAGCC TTGGTTGCAT CATTCCCAAT
GCTTCGGCCT GCGCCATGAG TGGACAGGGC GCGCGTGCCG GCAGCGCCTC GGCACTGATG
GGCTGTGTGC AGTTCAGCGT AGCTGCGGGT GCTGCGGCGC TGGTCGGGCT GCTGCATGAT
GGCAGTGCGG TGCCCATGGC AATCGTGATC AGCCTGTGCG GGGCGCTGGT GGTCAGTGTT
GCGCTGTTGA CCCGGCGTTT GCAGGCCAAG GCTCCCGCAT GA
 
Protein sequence
MNLRMVLILG ALSAFGPLAI DFYLPAFPAM AQAFATDEKH VQATLAAYFL GLSIGQLAYG 
PVADRFGRRK PLMFGVTLFT LASLACAYAP NLDTLVVARF IQALGGCAGM VLSRAIVSDK
CDPVASAKVF SQLMLVMGLA PILAPMLGGV LVNLAGWQSI FLALSLFSAG CLLAVSLGLP
ESLPEHIPRQ PLSGALRQYL RLLADRVFLG HALTGGIAIA GMFAYIAGSP FVFIKLYGVP
AEHYGWLFGT NAAGFILVAQ VNARLLAKRG PAFLLGRAVW LYLVAGLVLL GVAALRPAQL
WPLLVPLFIC IASLGCIIPN ASACAMSGQG ARAGSASALM GCVQFSVAAG AAALVGLLHD
GSAVPMAIVI SLCGALVVSV ALLTRRLQAK APA