| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0560 |
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| Symbol | |
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| ID | 5192900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 623953 |
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| End bp | 625824 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640585012 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001265912 |
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| Protein GI | 148545810 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT TTGCCTGTGC CACGATTCTC TGTACCCCTA CATTCCTTCT GGCCGCTGAG
CGCGACGACG CCCTCAAACT CCCCGACGTG CTGATCAGCG CCAGCCGCCA GGTCGAATCG
CGTACCGCCA CCAGCGCTGC CAACACGGTC TTCACCCGCA CCGACATCGA CCGCCTGCAA
CCCACCAGCG TTACCGACCT GCTCTCCCGC GTACCGGGCG TGCAAGTGGC ACCTACCGGT
GGCCGTGGTA GCCTGCCGGG CATCTTTATC CGTGGCACCA AGGCCGCGCA AAGTCTGGTG
CTGGTCGATG GCGTGCGCAT CGCCAATGCC ACCTCGGGCG ACAGCGGCCT GCAGTTTCTG
GACATCGACC AGATCGAGCG CATCGAAGTA CTGCGCGGCT CGCGCTCAGC GGTGTACGGC
AGCGATGCCA TTGGCGGGGT GATCCAGATC TTCACCCGAC GCAGCAGTGG CCCCGGTCTG
CAGCCACGCC TGCGCATGGC CGCCGGCAGC AACCAGACAT TCCAACGCAG CCTGGGGCTT
TCTGGCGGCA ACGACACGAC CCGCTTCAAC CTTGGCGCCA GCCTGGACGA AACTGCCGGC
ATCGACTCGA CCGGGCCATC CTTCGCCAGC GATGGTGACC ACGACGCCTA CCGCAACAAG
GCCCTGAACC TGAGCCTGAG CCACACCTTC GGTGAGCGCT TCGAGGCCGG CCTGAACGTG
CTCGACAGCC GTGGGCGCAG CGAGTACGAC AACCCGTTCG GCGGCTTCGA CCCCGTTACC
TTCGAGAGCT TCGGTCAACA ACCCTACACC GACTTCAGCG TCAGCAGCCT GGGCAGTTAC
GTTGACGTTC AGGTCACCGA AACCTGGCAT TCACGCCTTG AACTGGCCCA TGGCGAGAAC
CGAGACGACA AACGCGACAA GCTCAGCGCT GAGCGCTTCG TTTTCAACAC CTACCGCGAT
CAGGCTACCT GGCAGAACGA CCTGGCCCTC GGCGAACAGA ACACCATACT GATCGGTGGC
GACTGGTACG AAGACCGCGT ACACGGCAGT ACCGACTTCA CTGAGGACAG CCGCTGGAAC
CGTGCCGTGT TCGCCCAGCA CCGCTACCAG GGCGAGCAGA TTTCCACTGA GCTGGGGGTG
CGCCATGACC GCAACCAACA GTTTGGTGGC CAGACCACCT GGAGCGGCAG CCTGACCGTA
CCGCTGAACG CGCACAACGA TGTGCTGCTG TCCTACAGCG AAGGCTTCCG CGCGCCAACA
TTCAACGACC TGTATTACCC ACAGTTCAGC AACCCGAACC TGGACCCAGA GCACTCCAGA
AGCTACGAGC TGCAATGGCG CAGCCAGCTG ACTGCAGAGA GCCGGCTGGA GGTTTCGCTG
TACCGCACCG ACCTGCGCGA CGCGATCATC TTTGGCCAGG ACTCGATACC CCGCAACGTC
GCCTCGGCAC GAATCAATGG CGTGGAAATG GCGCTGGCGC AGCAATGGGG CGCCTGGCAC
AGCCAGCTTG GCCTGGCGCT GATCGACCCA CGCGACCGCG ACACTGGCCA CACCCTCGCC
CGCCGCGCCC GCCGCACCTT GAGCCTGGAT CTGGACCGTG AGTTCGGGCG TTTCAGCGTG
GGTGCCAGCT GGCAGGCGGT CAGCAGCAGT TATGACGATG AGGCCAACCG TAACCGCATC
GGTGGCTATG GCCTGCTAGG TTTGCGCGGC AGTTGGGCGG CTAGCGACGA ACTGAAACTC
GAAGCCAAGC TGGATAACCT GCTGGACCGC AGCTACAGCC GCGCCCTTTA CAGCTACGAG
GGTGCGTATC ACCCTTACCG CGAAGAGGGC CGCACTGTGC TCTTCAGCGT TACCTGGACA
CCGGCGCTTT AG
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| Protein sequence | MKKFACATIL CTPTFLLAAE RDDALKLPDV LISASRQVES RTATSAANTV FTRTDIDRLQ
PTSVTDLLSR VPGVQVAPTG GRGSLPGIFI RGTKAAQSLV LVDGVRIANA TSGDSGLQFL
DIDQIERIEV LRGSRSAVYG SDAIGGVIQI FTRRSSGPGL QPRLRMAAGS NQTFQRSLGL
SGGNDTTRFN LGASLDETAG IDSTGPSFAS DGDHDAYRNK ALNLSLSHTF GERFEAGLNV
LDSRGRSEYD NPFGGFDPVT FESFGQQPYT DFSVSSLGSY VDVQVTETWH SRLELAHGEN
RDDKRDKLSA ERFVFNTYRD QATWQNDLAL GEQNTILIGG DWYEDRVHGS TDFTEDSRWN
RAVFAQHRYQ GEQISTELGV RHDRNQQFGG QTTWSGSLTV PLNAHNDVLL SYSEGFRAPT
FNDLYYPQFS NPNLDPEHSR SYELQWRSQL TAESRLEVSL YRTDLRDAII FGQDSIPRNV
ASARINGVEM ALAQQWGAWH SQLGLALIDP RDRDTGHTLA RRARRTLSLD LDREFGRFSV
GASWQAVSSS YDDEANRNRI GGYGLLGLRG SWAASDELKL EAKLDNLLDR SYSRALYSYE
GAYHPYREEG RTVLFSVTWT PAL
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