Gene Pput_0505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0505 
SymbolrpmD 
ID5190469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp574362 
End bp574538 
Gene Length177 bp 
Protein Length58 aa 
Translation table11 
GC content54% 
IMG OID640584959 
Product50S ribosomal protein L30 
Protein accessionYP_001265859 
Protein GI148545757 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1841] Ribosomal protein L30/L7E 
TIGRFAM ID[TIGR01308] ribosomal protein L30, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00113735 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0573997 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACCG TAAAAGTAAC GCTGATCAAG AGCGTCTCGG GCCGTCTGCC TAACCACAAG 
CTGTGTGTTA AAGGCCTGGG TCTGCGTCGC ATCGGTCACA CTGTAGAAGT CCAGGATACT
CCCGAGAACC GCGGGATGAT CAACAAGGCT TACTACATGC TGAAGGTCGA GGGCTAA
 
Protein sequence
MATVKVTLIK SVSGRLPNHK LCVKGLGLRR IGHTVEVQDT PENRGMINKA YYMLKVEG