Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0505 |
Symbol | rpmD |
ID | 5190469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 574362 |
End bp | 574538 |
Gene Length | 177 bp |
Protein Length | 58 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640584959 |
Product | 50S ribosomal protein L30 |
Protein accession | YP_001265859 |
Protein GI | 148545757 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1841] Ribosomal protein L30/L7E |
TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00113735 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0573997 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACCG TAAAAGTAAC GCTGATCAAG AGCGTCTCGG GCCGTCTGCC TAACCACAAG CTGTGTGTTA AAGGCCTGGG TCTGCGTCGC ATCGGTCACA CTGTAGAAGT CCAGGATACT CCCGAGAACC GCGGGATGAT CAACAAGGCT TACTACATGC TGAAGGTCGA GGGCTAA
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Protein sequence | MATVKVTLIK SVSGRLPNHK LCVKGLGLRR IGHTVEVQDT PENRGMINKA YYMLKVEG
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