| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0480 |
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| Symbol | rpoB |
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| ID | 5191203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 552713 |
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| End bp | 556786 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640584933 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001265834 |
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| Protein GI | 148545732 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.262679 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0306779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTCATGGATG TGCCTTACCT CCTGGCCATC CAGCTGGATT CGTATCGCGA ATTCCTGCAA
GCGGGAGCAT CCAAGGATCA CTTCCGCGAC GTCGGCCTGC ACGCGGCCTT CAAATCGGTA
TTCCCGATCA TCAGCTACTC CGGCAATGCT GCCCTGGAGT ACGTAGGCTA TCGCCTGGGC
GAACCCGCCT TCGATGTGAA GGAATGTGTC CTGCGTGGCG TGACCTTCGC GGTCCCACTG
CGGGTCAAGG TGCGCCTGAT CATCTTCGAC AAGGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATCCCCCTGA TGACTGAGAA CGGTACCTTC
GTTATCAACG GTACCGAGCG TGTGATCGTT TCCCAACTGC ACCGTTCGCC TGGTGTGTTC
TTCGACCACG ACCGTGGCAA GACCCACAGC TCGGGCAAGC TGCTGTACTC CGCTCGCATC
ATCCCTTACC GCGGTTCCTG GCTGGACTTC GAGTTCGACC CGAAGGACTG CGTGTTCGTG
CGTATCGACC GTCGCCGCAA ATTGCCGGCC TCGGTGCTGC TGCGCGCCCT GGGTTACAGC
ACTGAAGAAG TGCTGAATAC CTTCTACACC ACCAACGTGT TCCACATTTC CGGCGAAAAA
CTCAGCCTGG AACTGGTGCC ACAGCGTCTG CGTGGTGAAG TTGCAGTCAT GGACATCCAT
GACGAAACCG GCAAAGTCAT CGTCGAGCAA GGCCGCCGTA TTACCGCGCG CCACATCAAC
CAGCTCGAGA AGGCCGGCGT CAAGCAACTG GACGTTCCAA TGGAATACGT CCTGGGCCGC
ACTACCGCCA AGGCTATCGT GCATCCGGCT ACCGGCGAAA TTCTCGCCGA ATGCAACACC
GAGATGACCA CCGAGCTGCT GATCAAGGTC GCCAAGGCGC AGGTTGTCCG TATCGAGACC
CTGTACACCA ACGACATCGA TTGCGGTCCG TTCATCTCTG ACACTCTGAA GATCGATACC
ACCAGCAACC AGCTGGAAGC TCTGGTCGAG ATCTACCGCA TGATGCGTCC AGGCGAGCCG
CCAACCAAGG ATGCAGCCGA GACCCTGTTC AACAACCTGT TCTTCAGTGC CGAGCGTTAC
GATCTGTCCG CCGTAGGCCG CATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAG
GGTTCGGGCG TGCTGAGCAA GGAAGACATC GTCGAGGTTC TGAAGACCCT GGTCGATATC
CGTAACGGCA AAGGTATCGT CGACGACATC GACCACCTGG GTAACCGCCG CGTACGTTGC
GTCGGCGAGA TGGCCGAGAA CCAGTTCCGT GTTGGCCTGG TGCGTGTCGA GCGCGCGGTC
AAGGAACGCC TGTCGATGGC GGAAAGCGAA GGCCTGATGC CGCAAGACCT GATCAACGCC
AAGCCGGTAG CGGCGGCGGT GAAAGAGTTC TTTGGCTCCA GCCAGCTGTC CCAGTTCATG
GACCAGAACA ACCCTCTCTC GGAGATTACC CACAAGCGCC GCGTCTCTGC ACTCGGCCCT
GGCGGTCTGA CCCGTGAGCG TGCCGGCTTC GAAGTCCGTG ACGTACACCC GACCCACTAT
GGCCGTGTGT GCCCGATCGA GACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCTTG
GCGGCCTACG CCCGCACCAA CCAGTACGGC TTCCTGGAAA GCCCGTACCG CGTGGTTAAG
GAAGGCGTTG TAAGTGACGA CATCGTGTTC CTGTCGGCAA TCGAAGAGGC GGATCACGTC
ATCGCACAGG CTTCGGCCGC GATGAACGAC AAGAAGCAAC TGATCGATGA GCTGGTAGCA
GTTCGTCACC TGAACGAATT CACCGTCAAG GCGCCGGAAG ACGTCACCCT GATGGACGTT
TCGCCGAAGC AGGTTGTTTC CGTTGCAGCG TCGCTGATTC CGTTCCTCGA GCACGACGAC
GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTACCAAC CCTGCGTGCC
GACAAGCCGC TGGTAGGTAC CGGCATGGAG CGCAACGTTG CCCGTGACTC CGGTGTCTGT
GTGGTTGCTC GCCGCGGTGG TGTGATCGAC TCGGTCGACG CTAGCCGTAT CGTTGTTCGC
GTTGCCGACG ACGAAGTGGA AACCGGCGAA GCAGGTGTGG ATATCTACAA CCTGACCAAG
TACACCCGTT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAAGGTGAC
AAGGTTCAGC GTGGTGACAT CATGGCCGAC GGCCCGTCCA CCGACATGGG TGAGCTGGCT
CTGGGTCAGA ACATGCGCAT CGCGTTCATG GCGTGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTGT CCGAGCGTGT GGTTCAGGAA GATCGCTTCA CCACCATCCA CATTCAGGAA
CTGACCTGTG TGGCGCGTGA CACCAAGCTC GGCCCAGAGG AAATCACTGC GGACATCCCG
AACGTGGGTG AAGCCGCACT GAACAAGCTG GACGAAGCCG GTATCGTTTA CGTAGGTGCT
GAAGTTGGCG CTGGCGACAT CCTGGTTGGC AAGGTCACGC CAAAAGGCGA AACCCAGCTG
ACTCCGGAAG AAAAACTGCT GCGCGCAATC TTCGGTGAGA AGGCCAGCGA CGTTAAGGAC
ACCTCCCTGC GTGTGCCAAC CGGCACCAAG GGTACTGTCA TCGATGTACA GGTCTTCACC
CGTGATGGCG TGGAGCGCGA TAGCCGCGCG CTGGCCATCG AGAAGATGCA GCTCGACGAG
ATCCGCAAGG ACCTCAACGA AGAGTTCCGC ATTGTTGAAG GTGCAACCTT CGAGCGTCTG
CGTTCTGCCC TGAACGGCCA GGTGGTTGAT GGTGGTGCGG GCCTGAAGAA AGGCACCGTG
ATCACTGACG AGGTGCTGGA CGGTCTGGAG CACGGCCAGT GGTTCAAACT GCGCATGGCT
GAAGATGCAC TGAACGAGCA GCTGGAAAAG GCTCAGCAGT ACATCGTCGA CCGTCGCCGT
CTGCTGGACG ACAAGTTCGA AGACAAGAAG CGCAAGCTGC AGCAGGGCGA TGACCTGGCA
CCGGGCGTAC TGAAGATCGT CAAGGTTTAC CTGGCAATCC GCCGTCGCAT CCAGCCGGGT
GACAAGATGG CCGGTCGTCA CGGTAACAAG GGCGTTGTCT CGGTCATCAT GCCGGTTGAA
GACATGCCGC ACGATGCCAA CGGTACTCCG GTTGACGTCG TACTGAACCC GCTGGGTGTA
CCTTCGCGTA TGAACGTTGG TCAGATCCTT GAAACCCACC TGGGCCTCGC GGCCAAGGGT
CTGGGCGAGA AGATCGACCG CATGCTCGAA GAGCAGCGTA AAGCTGCTGA GCTGCGCGTG
TTCCTGACCG AGGTCTACAA CGAGATCGGC GGTCGTCAGG AAAACCTCGA CGAGTTCACC
GACGAAGAGA TCCTGGCCCT GGCTAACAAC CTGAAGAAAG GCGTGCCGAT GGCTACCCCG
GTCTTCGATG GTGCCAAGGA GCGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCA
GAGAGCGGCC AGATGGTGCT GTTCGACGGC CGTACCGGCA ACAAGTTCGA GCGTCCTGTG
ACCGTTGGTT ACATGTACAT GCTCAAGCTG AACCACTTGG TGGACGACAA GATGCACGCG
CGTTCCACTG GTTCCTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCGCAGTTC
GGTGGTCAGC GTTTCGGGGA GATGGAAGTG TGGGCGCTGG AAGCATACGG CGCGGCATAC
ACCCTGCAAG AAATGCTCAC AGTGAAGTCG GACGACGTGA ACGGCCGTAC CAAGATGTAC
AAGAACATCG TGGATGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC CTTCAACGTG
TTGATCAAAG AGATCCGTTC GCTCGGTATC GATATCGATC TGGAAACCGA ATAA
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| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGASKDHFRD VGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEVLNTFYT TNVFHISGEK
LSLELVPQRL RGEVAVMDIH DETGKVIVEQ GRRITARHIN QLEKAGVKQL DVPMEYVLGR
TTAKAIVHPA TGEILAECNT EMTTELLIKV AKAQVVRIET LYTNDIDCGP FISDTLKIDT
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSAERY DLSAVGRMKF NRRIGRTEIE
GSGVLSKEDI VEVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGVVSDDIVF LSAIEEADHV IAQASAAMND KKQLIDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
KVQRGDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LAIEKMQLDE
IRKDLNEEFR IVEGATFERL RSALNGQVVD GGAGLKKGTV ITDEVLDGLE HGQWFKLRMA
EDALNEQLEK AQQYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDVVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKIDRMLE EQRKAAELRV FLTEVYNEIG GRQENLDEFT DEEILALANN LKKGVPMATP
VFDGAKEREI KAMLKLADLP ESGQMVLFDG RTGNKFERPV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
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