| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0452 |
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| Symbol | |
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| ID | 5194123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 522250 |
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| End bp | 524139 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640584896 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001265806 |
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| Protein GI | 148545704 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.459587 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAAG CCCCGTTATT GCGCTTTACC CTCGCTTCAC TGGCCTTGGC CTGTAGCCAG
GCGTTGGCCG GCCCTTCGCC CTATTCAACC CTCATCGTGT TTGGCGACAG CCTCGCCGAT
GCAGGGCAGT TTCCCGACCT GAGCGGCGGT ACCCCAGGCG CGCGTTTCAC CAACCGCGAT
GCCGACGGCA ACTTCGCTCC GGTGTCACCG ATGATCCTCG GTGGCCGCCT GGGCGTCGCG
CCTGGCGACC TGAACCCGTC GACATCCATA GGCATCCAGC CCGATGGTAA TAACTGGGCA
GTTGGCGGGT ACACCACCCA ACAGATCCTG GACTCGATCA CGACAACGTC CGAGACCGTC
ATCCCACCAG GAAACCCCAA TGCCGGGTTG GTGCTGCGCG AGCGCCCCGG CTACCTGGCC
AACGGCCTGC GCGCCGACCC AAATGCCTTG TATTACCTGA CAGGTGGCGG TAACGACTTC
CTGCAGGGCC TGGTGAATAG CCCGGCCGAC GCCGTAGCCG CCGGCGCCCG CCTGGCTGCC
AGCGCCCAAG CCCTTCAGCA AGGAGGCGCG CGCTACATCA TGGTCTGGCT GCTACCTGAC
CTCGGCCAAA CGCCCAATTT CAGCGGCACG CCACAGCAAA ACCCACTGTC ACTGCTCTCC
GCTGCGTTCA ACCAGTCACT GATCAGCCAG CTAGGGCAGA TCGATGCCCA GATCATTCCA
CTGAACATCC CTGTGCTGTT GAGCGAGGCG CTGTCCAGCC CCAGTCAGTT CGGCCTGGCC
AGCGACCAGA ACCTGGTCGG CACCTGCTAC AGCGGCGATA GCTGCGTGGA AAACCCGGTG
TACGGGATCA ACGGCACAAC GCCAAACCCG ACCAAACTGC TGTTCAACGA CTCGGTCCAC
CCGACTATCG CGGGTCAGCA GCTGATTGCC GATTACGCCT ACTCGATCCT CGCAGCCCCC
TGGGAACTGA CTCTGCTACC GGAAATGGCC CACGCCAGCC TGCGGGCTCA TCAGGATGAG
TTGCGCAATC AGTGGCAGAC GCCTTGGCAA GCCGTTGGCC AATGGCAAGC CTTTGTCGCC
AGTGGCGCTC AGGACCTGGA CTTCGACGGC CAGCGCAGCG CGGCCAGCGG TGACGGCCGC
GGCTACAACC TGACCGTGGG CGGCAGCTAT CGCCTGAACG ACGCATGGCG CCTGGGCCTG
GCCGGCGGTG CGTACCGCCA GAAGCTGGAA GCCGGCGAAC AGGATTCGGA CTACAAGCTG
AACAGCTATA TGGCCAGCGC CTTTGCCCAA TACCGTCAGG ACCGCTGGTG GGCCGACGCG
GCGCTGACCG CCGGGCACCT GGACTATAGC GACCTCAAGC GTACCTTCGC CCTGGGCGTG
AATGACCGCA GTGAAAAAGG CGACACCGAC GGCGAGGCCT GGGCAATGTC CGGGCGGCTG
GGCTACAACC TGGCGGCCGA CACCAGCAAC TGGCAGTTGG CACCTTTCAT CAGTGCCGAC
TATGCGCGGG TGAAGGTGGA TGGCTACGAA GAGAAGAGCG GGCGCTCGAC GGCGCTTGGC
TTCGATGACC AGGAGCGCAC GTCACGTCGC CTGGGCGTGG GGCTGTTGGG CAGTGTGCAG
GTACAGCCAA ATACCCGGCT TTTTGCCGAG GTGGCGCAGG AGCATGAGTT CGAGGACGAC
CAGCAGGATG TGACAATGCA CCTGACCAGC TTGCCAGCGA ATGATTTCAC CCTGACCGGG
TATACGCCGC ACAGCGACCT GACCCGGGCG AGCCTGGGTG TGAGCCATGA ACTGGTGGCA
GGGGTGCATT TGCGCGGGAA CTACAATTGG CGCAAGAGTG ATGAGTTGAC GCAGCAGGGC
GTTAGCGTGG GGGTTAGCGT GGACTTTTGA
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| Protein sequence | MRKAPLLRFT LASLALACSQ ALAGPSPYST LIVFGDSLAD AGQFPDLSGG TPGARFTNRD
ADGNFAPVSP MILGGRLGVA PGDLNPSTSI GIQPDGNNWA VGGYTTQQIL DSITTTSETV
IPPGNPNAGL VLRERPGYLA NGLRADPNAL YYLTGGGNDF LQGLVNSPAD AVAAGARLAA
SAQALQQGGA RYIMVWLLPD LGQTPNFSGT PQQNPLSLLS AAFNQSLISQ LGQIDAQIIP
LNIPVLLSEA LSSPSQFGLA SDQNLVGTCY SGDSCVENPV YGINGTTPNP TKLLFNDSVH
PTIAGQQLIA DYAYSILAAP WELTLLPEMA HASLRAHQDE LRNQWQTPWQ AVGQWQAFVA
SGAQDLDFDG QRSAASGDGR GYNLTVGGSY RLNDAWRLGL AGGAYRQKLE AGEQDSDYKL
NSYMASAFAQ YRQDRWWADA ALTAGHLDYS DLKRTFALGV NDRSEKGDTD GEAWAMSGRL
GYNLAADTSN WQLAPFISAD YARVKVDGYE EKSGRSTALG FDDQERTSRR LGVGLLGSVQ
VQPNTRLFAE VAQEHEFEDD QQDVTMHLTS LPANDFTLTG YTPHSDLTRA SLGVSHELVA
GVHLRGNYNW RKSDELTQQG VSVGVSVDF
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