| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0336 |
|---|
| Symbol | |
|---|
| ID | 5191021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 382991 |
|---|
| End bp | 384283 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640584782 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_001265693 |
|---|
| Protein GI | 148545591 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0008982 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.677602 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA CCGCAACCCT GAGCCTGGGC GATCCACTGG AACCTGCACG CAAGGCCACC
GCCGAGATGC TGCAGACCCG CGAGCGAACC TACTCGCTGC CCCAGCCTTT CTACACCGAC
GAGCGTCTGT TCCAAATCGA CATGCAGGAG ATCTTCCACA AAGAATGGCT GATCGCCGGC
ATGACCTGCG AGATCCCGGC GAAAGGCAAC TACATCACCC TGCAGATCGG CAAGAACCCG
ATCATCGTTA TCCGTGGTGC CGAAGGTAAG GTGCACGCCT TCCACAACGT CTGCCGTCAC
CGCGGTTCAC GCCTGTGCGT GAGCGACAAA GGCAAGGTGG CCAAGCTGGT CTGCCACTAC
CACCAGTGGA CCTACGAACT GGACGGTCGC CTGCTGTTCG CCGGTACCGA GATGGGCGCC
GACTTCGACA TGAAGGAATA TGGCCTGAAG CCAGTGAACG TGAAGGTGGC CGGCGGCTAC
ATCTTCATCA GCCTGGCGGA AAACCCGCCC GCCATCGACG AGTTCCTGGC CACGCTCGAG
CACTACATGG AACCGTACGA CATGGAGAAC ACCAAGGTGG CGGTGCAGAC CACCTTGATG
GAAAAGGCCA ACTGGAAACT GGTGCTGGAA AACAACCGCG AGTGCTACCA CTGCTCCGGT
TCGCACCCGG AACTGCTGCA AACCCTGCTG GAATGGGACG ATACCAACGA CCCGCGTGCC
AGCCAGGAAT TCAAGGACCA CGTGGCCGCC TCCGCCGCTG CCTGGGAAGC CGAGAAGATC
CCTTACCTGC ACAAGAGCCA CGGCCTGCGT AACCGCATCG TGCGCATGCC GCTGCTCAAG
GGCACCGTGT CGATGACCAT GGACGGCAAG CAGGCCTGCC AGAAGCTGAT GGGTCGCATC
AAGAACCCGG ACCTGGGCTC GATGCGCATC CTGCACCTGC CGCACTCGTG GAACCACTGC
ATGGGCGACC ACATGATCGT GTTCACCGTG TGGCCGATCA GCGCCCAGGA GACCATGGTC
ACCACCAAGT GGCTGGTGCA CAAGGATGCC GTCGAAGGTG TGGACTACAA CCCCGAGAAC
ATGCGCAAGG TGTGGGATGC CACCAACGAC CAAGACCGCC GTCTGGCGGA AGAGAACCAG
CGTGGGATCA ACTCCACCGC GTACCAACCC GGCCCGTATT CGAAGACTTA CGAGTTTGGT
GTGGTGAACT TCATTGACTG GTACAGCGGG CGGATGCTGA ACAACCTGGG AGCAGAGCCG
GCGCCGTATC TGAAGGAAGT GCAGGCGCAG TAA
|
|---|
| Protein sequence | MDVTATLSLG DPLEPARKAT AEMLQTRERT YSLPQPFYTD ERLFQIDMQE IFHKEWLIAG
MTCEIPAKGN YITLQIGKNP IIVIRGAEGK VHAFHNVCRH RGSRLCVSDK GKVAKLVCHY
HQWTYELDGR LLFAGTEMGA DFDMKEYGLK PVNVKVAGGY IFISLAENPP AIDEFLATLE
HYMEPYDMEN TKVAVQTTLM EKANWKLVLE NNRECYHCSG SHPELLQTLL EWDDTNDPRA
SQEFKDHVAA SAAAWEAEKI PYLHKSHGLR NRIVRMPLLK GTVSMTMDGK QACQKLMGRI
KNPDLGSMRI LHLPHSWNHC MGDHMIVFTV WPISAQETMV TTKWLVHKDA VEGVDYNPEN
MRKVWDATND QDRRLAEENQ RGINSTAYQP GPYSKTYEFG VVNFIDWYSG RMLNNLGAEP
APYLKEVQAQ
|
|---|
| |