| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0324 |
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| Symbol | |
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| ID | 5190380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 369416 |
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| End bp | 370360 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640584770 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001265681 |
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| Protein GI | 148545579 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.210112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.40501 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCACAGCT TGATCCGCCG CAGCCTGTTG CCCCTTGCCC TGAGCAGCAT CGTCGCCACC
CCGCTTTTCG CCGCCGAGCC CGCCGCCTGC AAAAACGTGC GCCTGGGCGT GGTCAACTGG
ACCGACGTCA TTGCCACCAG CGCCATGGCC CAGGTACTGC TCGACGGCCT GGGGTACCAG
ACCAAACAGA CCAGTGCCTC GCAACAGATC ATCTTCGCCG GCATACGCGA CAAACGCCTG
GACATGTTCC TGGGTTACTG GAACCCGATC ATGACCCAGA CCATTACCCC GTTCGTCGAT
GCCAACCAGG TCAAGGTGCT GGACAAGCCA AGCCTGGAGG ACGCGCGCGC CACCTTGGCC
GTGCCGAAAT ACCTCTACGA CAAGGGCCTG AAGACGTTCG CCGACATCCA CAAGTTCGAG
AAAGCGCTGG GCGGCAAGAT CTATGGCATC GAACCGGGTT CCGGTGCCAA TACGCAGATC
AAAGCGATGA TCACCAAGAA CCAGTTCGAC TTGGGCAAGT TCCAGCTGGT CGAGTCCAGC
GAGGCCGGCA TGCTCGCCGC CGTCGACCGC GCGGTGCGGC GCAAGGAGGC CGTGGTGTTC
TTCGGCTGGG CGCCGCACCC GATGAACGTG AACATCGACA TGGCCTACCT GGGTGACAGC
CAGGATGCAC TCGGCCCTGA CGAAGGCCGT GCGACGGTGT GGACAGTGAC GGCGCCGGAC
TACGCCGAAC GCTGCCCCAA TGCCCACCGC CTGCTGGCCA ACCTGAAGTT CAGCGCCGAG
GACGAGAGCC GCATGATGCA GCCACTGCTT GACCACAAAG ACGCGCTGGA ATCGGCCCGC
CAGTGGCTCA AGGACCACCC CGAGGACAAG GCGCGCTGGC TTGAGGGTGT GACCACCTTC
GATGGCAAGC CGGCCGCGGA CAACCTCAAG CTTACCGCCA ACTGA
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| Protein sequence | MHSLIRRSLL PLALSSIVAT PLFAAEPAAC KNVRLGVVNW TDVIATSAMA QVLLDGLGYQ
TKQTSASQQI IFAGIRDKRL DMFLGYWNPI MTQTITPFVD ANQVKVLDKP SLEDARATLA
VPKYLYDKGL KTFADIHKFE KALGGKIYGI EPGSGANTQI KAMITKNQFD LGKFQLVESS
EAGMLAAVDR AVRRKEAVVF FGWAPHPMNV NIDMAYLGDS QDALGPDEGR ATVWTVTAPD
YAERCPNAHR LLANLKFSAE DESRMMQPLL DHKDALESAR QWLKDHPEDK ARWLEGVTTF
DGKPAADNLK LTAN
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