Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0316 |
Symbol | |
ID | 5191624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 359947 |
End bp | 360894 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640584762 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_001265673 |
Protein GI | 148545571 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.617924 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0420722 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGGTT CACCCTCGCT GTTACTGGTT GCGTTGCTGT CCGCGCCATT GCTGGCCCAA GCAGCCGAAC CCGAGCAATG TCAGACTGTA CGCTTCTCCG ATGTCGGCTG GACCGACATC ACAGTCACGA CCGCGACCAC CAGCGTTGTG CTCGAAGCAC TGGGTTACAA GACCCACACC ACCATGATCT CGGTACCGGT GACCTACAAG TCGCTGGCCA CCGGTAAGGA CCTGGACGTG TTTCTCGGCA ACTGGATGCC GACCATGGAG AACGACATCA AGCAGTACCG CGACGCCGGC ACGGTAGAAA CCGTGCGCGC CAACCTGGAG AACGCCAAGT ACACCCTGGC AGTCCCCCAG GCGCTGTACG ACAAGGGCCT GAAGGATTTC AGCGACATAC CCAAGTTCAA GAAGGAACTG GACGGCAAGA TCTACGGCAT CGAACCGGGT AACGACGGTA ACCGCACCAT CCAGAGCATG ATCGACAAGA ACGCCTTTGG CTTGAAGGAC GCCGGTTTCA AGATCGTGCA GTCCAGCGAG GCGGGCATGC TGTCGCAAGT TGACCGCGCG CAGAAACGCG GCGAGGCATT GGTGTTCCTG GGCTGGGAGC CACACCCGAT GAACACCCGC TTCAAGATGC AGTACCTGAC CGGCGGGGAC GACTTCTTCG GCCCCGACTT CGGCAAGGCG ACCGTGCTGA CAAACACCCG CAAAGGATAC ACGCAGGAAT GCAGCAACGT TGGCCAACTG CTTAAGAACC TGTCGTTCGA GCTCAAGGAT GAAAGCACCA TGATGGGCTA TGTCCTGGAC GACAAGATGA AACCCGAGGC CGCCGCCAAG AAATGGATCA AGGACAACCC AGGCAAGCTG GATGCCTGGC TGGCCGGCGT TACCACCGTT GATGGCAAGC CTGGCCTGGA GGCGGTCAAG GCCAAGCTTA CGCAATAA
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Protein sequence | MKGSPSLLLV ALLSAPLLAQ AAEPEQCQTV RFSDVGWTDI TVTTATTSVV LEALGYKTHT TMISVPVTYK SLATGKDLDV FLGNWMPTME NDIKQYRDAG TVETVRANLE NAKYTLAVPQ ALYDKGLKDF SDIPKFKKEL DGKIYGIEPG NDGNRTIQSM IDKNAFGLKD AGFKIVQSSE AGMLSQVDRA QKRGEALVFL GWEPHPMNTR FKMQYLTGGD DFFGPDFGKA TVLTNTRKGY TQECSNVGQL LKNLSFELKD ESTMMGYVLD DKMKPEAAAK KWIKDNPGKL DAWLAGVTTV DGKPGLEAVK AKLTQ
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