Gene Pput_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0316 
Symbol 
ID5191624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp359947 
End bp360894 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content59% 
IMG OID640584762 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001265673 
Protein GI148545571 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components 
TIGRFAM ID[TIGR03414] choline ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.617924 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0420722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGGTT CACCCTCGCT GTTACTGGTT GCGTTGCTGT CCGCGCCATT GCTGGCCCAA 
GCAGCCGAAC CCGAGCAATG TCAGACTGTA CGCTTCTCCG ATGTCGGCTG GACCGACATC
ACAGTCACGA CCGCGACCAC CAGCGTTGTG CTCGAAGCAC TGGGTTACAA GACCCACACC
ACCATGATCT CGGTACCGGT GACCTACAAG TCGCTGGCCA CCGGTAAGGA CCTGGACGTG
TTTCTCGGCA ACTGGATGCC GACCATGGAG AACGACATCA AGCAGTACCG CGACGCCGGC
ACGGTAGAAA CCGTGCGCGC CAACCTGGAG AACGCCAAGT ACACCCTGGC AGTCCCCCAG
GCGCTGTACG ACAAGGGCCT GAAGGATTTC AGCGACATAC CCAAGTTCAA GAAGGAACTG
GACGGCAAGA TCTACGGCAT CGAACCGGGT AACGACGGTA ACCGCACCAT CCAGAGCATG
ATCGACAAGA ACGCCTTTGG CTTGAAGGAC GCCGGTTTCA AGATCGTGCA GTCCAGCGAG
GCGGGCATGC TGTCGCAAGT TGACCGCGCG CAGAAACGCG GCGAGGCATT GGTGTTCCTG
GGCTGGGAGC CACACCCGAT GAACACCCGC TTCAAGATGC AGTACCTGAC CGGCGGGGAC
GACTTCTTCG GCCCCGACTT CGGCAAGGCG ACCGTGCTGA CAAACACCCG CAAAGGATAC
ACGCAGGAAT GCAGCAACGT TGGCCAACTG CTTAAGAACC TGTCGTTCGA GCTCAAGGAT
GAAAGCACCA TGATGGGCTA TGTCCTGGAC GACAAGATGA AACCCGAGGC CGCCGCCAAG
AAATGGATCA AGGACAACCC AGGCAAGCTG GATGCCTGGC TGGCCGGCGT TACCACCGTT
GATGGCAAGC CTGGCCTGGA GGCGGTCAAG GCCAAGCTTA CGCAATAA
 
Protein sequence
MKGSPSLLLV ALLSAPLLAQ AAEPEQCQTV RFSDVGWTDI TVTTATTSVV LEALGYKTHT 
TMISVPVTYK SLATGKDLDV FLGNWMPTME NDIKQYRDAG TVETVRANLE NAKYTLAVPQ
ALYDKGLKDF SDIPKFKKEL DGKIYGIEPG NDGNRTIQSM IDKNAFGLKD AGFKIVQSSE
AGMLSQVDRA QKRGEALVFL GWEPHPMNTR FKMQYLTGGD DFFGPDFGKA TVLTNTRKGY
TQECSNVGQL LKNLSFELKD ESTMMGYVLD DKMKPEAAAK KWIKDNPGKL DAWLAGVTTV
DGKPGLEAVK AKLTQ