| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0307 |
|---|
| Symbol | |
|---|
| ID | 5191423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 350219 |
|---|
| End bp | 352465 |
|---|
| Gene Length | 2247 bp |
|---|
| Protein Length | 748 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640584753 |
|---|
| Product | AsmA family protein |
|---|
| Protein accession | YP_001265664 |
|---|
| Protein GI | 148545562 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0304017 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGT TCGGCAAAAT CCTGGGACTG GGGCTTCTCG GGTTACTGCT GATCATCGTG
GCGCTGGGCT TCGCCCTGAC CCACCTCTTT GATCCCAACG ACTACAAAGA CGAGATTCGC
CAGCTGGCAC GCGACAAGGC GCACGTCGAA CTGACCCTCA ACGGTGACAT CGGCTGGAGC
CTGTTCCCGT GGCTGGGTCT GGAGCTGCAT GAAGCCAGCA TCGCTACCTT GAACAAACCC
AAGGAACCGT TCGCCGACCT GCAGATGCTT GGCCTTTCAG TCCGTGTACT GCCGCTGCTG
CGCCGCGAAG TGCAAATGAG CGACGTACGT GTCGAGGGCC TGAACCTGAC CCTGGCGCGT
GACGAACAGG GCCATGGCAA CTGGGAGGAC ATCGGCAAGC CGCTACCCGC GCAGAATGGC
GCAGGCACCG ATGCACAGGC ACAGGCACCT GCCGAGCAGA CGCCTGCGAC CACCGACAGC
AACGACCGCG CCATCAAGCT GGACATCGAC AGCCTGACCG TGAACAACGC CCGCGTGCAG
TACACCGATG CCAAGACCGG CCAAAATTAC AGCGCCGAGA GCATCCAGCT GAGCACCGGG
CCGGTCCATG AAGGCGCAAA CATCCCGCTC AAGGCCAGCG CCTTCATCAG CGCCAGCCAG
CCGAGCATCA AAGCCCGTAC CGAGCTGGCC GGCGAATTGC GCTTCGACCG CAAGCTCAAG
CGCTACAACT TCGAAGACAT GCGCCTGTCG GGCGAGACCT CGGGTGAGCC TACCGGCGGC
AAGACCGTGA CCTTCGCCGC CCAGGGCCAA CTGCTGGTCG ACCTGGCCGC CAATGTCGCC
TCGTGGAACG GCCTGAAAGT CTCGGCCAAC CAACTGCGCG CCCTCGGTGA GCTGAACCTG
CGTGATCTGG ACAAAGCCCC CCAGCTGAGC GGCGGCCTGT CCATCGCCCA GTTCAACCTG
CGCGCCTTCC TTGAAAGCAT CGGCCACCCG CTGCCGGCCA CCAACGACCC GGCCGCCTTC
GCCAAGCTGG AGCTGGTGAC TCGTCTGCAG GGCACGCCCA GCAGCCTGGC CCTGGAAGAC
CTGGCGGTGA AGCTGGACGA CAGCACCTTC AGCGGCCGCG TGGCCGTCGA AGATTTCGCC
AAACACGCCC TGCGCCTGCA GCTTAAGGGC GACACCTTCG ACGCCGACCG CTACCTGCCG
GCCAAGAGCG AAGAAGCCAA GGGCGCCACC GCTGCGCGCC AGGCCGAGGT CAAGCAACAA
GAGGCCAGCG CCGTAGCCGG TGCTGGCACC ACACCACTGC CCAACGCCCC AACGCAAGTG
GCTTGGAGCG ACGACAAGCT GCTGCCGGTC GACCGTCTGC GCGCCCTCGA CCTGCAGGCC
GACCTGGCCT TCGGCTCGTT GACCCTGGAC AAGCTGCCGA TCGAGGGCGC CCAGCTCAAG
GCCGTTGGCC AAGGCGGCCT GCTGACCCTG CAAACCCTGC GCGGAGCGCT GTACAACGGC
ACCTTCGAAG CCAAGGGCAC GGTCGACGTG CGCCCTGCCG TGCCACAGCT GGGTGTAAAC
ACCAATATCC AGCGGGTGCC GGTGGAACAC TTCATCAAGG CCGAAGGCAA GGAACAGACG
CCGCCGGTCA AGGGCCTGCT GACCCTGACC AGTGATCTGA CAGCCACCGG TAACAGCCAG
AAAGCACTGG TCGACACCCT GAACGGCAGC GCAAACTTCG CCATCAACGA TGGCGTACTG
GTCAATGCCA ACCTGGAACA GCAGCTGTGC CAGGCCATCG CCACGCTCAA TCGCAAGACG
CTGAGCAGCG AACCACGCGG CAAGGACACC CCGTTCCAGG AACTGCGCGG CAGCCTGGTA
GTGCGCAATG GCGTCGCCAG CAACCCGGAC CTCAAGGCGC GCATCCCGGG CCTCACCGTC
AATGGCCATG GTGACCTCGA CCTGCGCGTG CTGGGCATGG ACTACAACGT CGGCGTAGTC
GTCGAAGGCG ACCAGCGTGC CATGCCGGAC CCGGCCTGCC AGGTCAACGA ACGTTATGTA
GGTGTTGAAG TACCCCTGCG CTGCCGTGGT CCGCTGGAAC TCGGCGCAAA GGCCTGCCGC
CTGGACCAGA ACGGCCTGGG CAAGGTTGCC GCCAAGCTGG CCGGTAATCG CCTGAAGGAC
AAGATCGATG AAAAGCTTGA TGAAAAACTT GGAGACAAAG TGAGCCCGGA ACTGAAAGAC
GCGCTCAAGG GGCTGTTCAA GCGATGA
|
|---|
| Protein sequence | MKAFGKILGL GLLGLLLIIV ALGFALTHLF DPNDYKDEIR QLARDKAHVE LTLNGDIGWS
LFPWLGLELH EASIATLNKP KEPFADLQML GLSVRVLPLL RREVQMSDVR VEGLNLTLAR
DEQGHGNWED IGKPLPAQNG AGTDAQAQAP AEQTPATTDS NDRAIKLDID SLTVNNARVQ
YTDAKTGQNY SAESIQLSTG PVHEGANIPL KASAFISASQ PSIKARTELA GELRFDRKLK
RYNFEDMRLS GETSGEPTGG KTVTFAAQGQ LLVDLAANVA SWNGLKVSAN QLRALGELNL
RDLDKAPQLS GGLSIAQFNL RAFLESIGHP LPATNDPAAF AKLELVTRLQ GTPSSLALED
LAVKLDDSTF SGRVAVEDFA KHALRLQLKG DTFDADRYLP AKSEEAKGAT AARQAEVKQQ
EASAVAGAGT TPLPNAPTQV AWSDDKLLPV DRLRALDLQA DLAFGSLTLD KLPIEGAQLK
AVGQGGLLTL QTLRGALYNG TFEAKGTVDV RPAVPQLGVN TNIQRVPVEH FIKAEGKEQT
PPVKGLLTLT SDLTATGNSQ KALVDTLNGS ANFAINDGVL VNANLEQQLC QAIATLNRKT
LSSEPRGKDT PFQELRGSLV VRNGVASNPD LKARIPGLTV NGHGDLDLRV LGMDYNVGVV
VEGDQRAMPD PACQVNERYV GVEVPLRCRG PLELGAKACR LDQNGLGKVA AKLAGNRLKD
KIDEKLDEKL GDKVSPELKD ALKGLFKR
|
|---|
| |