Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0284 |
Symbol | |
ID | 5191888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 328265 |
End bp | 329584 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640584729 |
Product | outer membrane porin |
Protein accession | YP_001265642 |
Protein GI | 148545540 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.314228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAAAA CCAGGATCAG CCTGGTCGCC CTGGCGATGA TCGCCGCGAC CCAGGCTCAG GCCAATGACC AGGCTGACAG CAAGGGCTTC ATCGAGGACA GTCACGCCAA CGTCCTTCTG CGCAACGCCT ACATCAACCG TGACAAGAAG CATGGCACCG ACGACCAGAT CGAATGGGGC CAGGCGTTCA TCGCCAACTT CTCCTCCGGT TTCACCCAGG GCACCGTTGG CGTCGGTGTT GACGCATTCG GCCTGTACGC CGTGCGCCTG GATGGTGGCA AAGGCCACAA CGGTGGTGGC GGCGTCGACT TCTTCAAACC GCACGAAACC ACCAATGCCG AAGGCAACGC CAGCTCGCCG CACAACCTGG CGCGTGGTGG TGCTGCTGTG AAATTCCGCA TTTCCAACAC CGTGCTGAAG TACGGTGACC AGATGCCAGC ACTGCCAGTG CTGCAGTACG ACGATGCACG TCTGCTGCCA GAAAGCTTCA CCGGCACCCT GATCACCTCC AAAGAGATCC AGGGCCTGGA ACTGAACGCC GGCCGCTTCA CCCAGGAAGC GCGCAAGAGC GCCGAGCGCC GTGATGGTGG TGGCCTGAAG TCGATCAACG TCTTAGGTGG CAGCTACAAG TTCACCGACA ACTTCACCGC TTCGCTGTAC ACCGCCGACA ACGAAGATGT GATGAAGAAG CACTACCTGG GCTTGAACTA CGTCTTCCCG ATCGCCAGCG ACCAGTCCCT GACCCTGGAC TTCAACGGCT ACAAGTCGGA CATCAACAAC AAGTACGTAA AAGCCGCAGG CCTGAACGGC GACTCCAACA CCATCTGGAG CCTTGCAGCC ACCTACGCGT ACGGTGCGCA CTCGTTCACC CTCGCTCACC AGCGCAGCAC CGGCAGCACT GGCTACAACT ACGGCTTCTA CCAGAACGCC GGCGGCGTGG GTGACGGTGG TTCCACCATC TACCTGGCCA ACTCGTACTG GTCCGACTTC AACGCCGAAG ACGAGCGCTC CTGGCAGCTT GGCTACGGCC TGGACTTCGG TGCCTATGGC ATTCCGGGCC TGACCTACAA GCTGGCCTAC GTGGTGGGTG ACAACATCAA CACCCGTAAC GTCGCCAACC CGCAAGGCTT CGGCGAAGGT AAAGAGCGCG AGATCTTCAA CCAGATCCGT TACGTGGTGC AGGACGGCCC GGCCAAGGAC CTGTCGATCA AGCTGCGTAG CTCGTTCTTG CGTACCAACA ACGCCGTGCA GCAGAACGGT TACAACGACG ACGGCAACGA AGTCCGCGTA TTCGTCGAGT ACCCGATCAG CATCTTCTGA
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Protein sequence | MLKTRISLVA LAMIAATQAQ ANDQADSKGF IEDSHANVLL RNAYINRDKK HGTDDQIEWG QAFIANFSSG FTQGTVGVGV DAFGLYAVRL DGGKGHNGGG GVDFFKPHET TNAEGNASSP HNLARGGAAV KFRISNTVLK YGDQMPALPV LQYDDARLLP ESFTGTLITS KEIQGLELNA GRFTQEARKS AERRDGGGLK SINVLGGSYK FTDNFTASLY TADNEDVMKK HYLGLNYVFP IASDQSLTLD FNGYKSDINN KYVKAAGLNG DSNTIWSLAA TYAYGAHSFT LAHQRSTGST GYNYGFYQNA GGVGDGGSTI YLANSYWSDF NAEDERSWQL GYGLDFGAYG IPGLTYKLAY VVGDNINTRN VANPQGFGEG KEREIFNQIR YVVQDGPAKD LSIKLRSSFL RTNNAVQQNG YNDDGNEVRV FVEYPISIF
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