| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0260 |
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| Symbol | |
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| ID | 5191382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 301830 |
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| End bp | 304154 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640584705 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_001265618 |
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| Protein GI | 148545516 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.217676 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGCA TCAACAGCCG TATCGCCGAG GAACTGGGCG TACGCCCGCA GCAGGTCGAG
GCGGCCGTGA GCCTGTTGGA CGAAGGCTCG ACCGTGCCCT TCATCGCCCG CTACCGCAAG
GAAGTGACCG GTAGCCTTGA CGACACTCAG TTGCGCCACC TGGAAGAGCG CCTGCGCTAC
CTGCGCGAAC TCGACGAGCG CCGCGCCAGC ATCCTTTCCA GTATCGAGGA ACAGGGCAAG
CTGACCCCGG AACTGGCCCG CGAGATCAAG CTGGCCGACA CCAAGACCCG CCTCGAAGAC
CTTTACCTGC CCTACAAGCA GAAACGCCGC ACCAAGGGCC AGATCGCCCT GGAAGCCGGC
CTCGGCGAAC TGGCCGATGG CCTGTTCAAC GACCCGACCC TGGCCCCGGA AAGCGAAGCC
GCACGCTTCG TCAACGTCGA AAAGGGCGTG GCCGACGTCA AGGCCGCGCT GGAAGGCGCC
AAATACATCC TGATGGAGCG CTTTGCCGAA GACGCCGCCC TGCTCGACAA GCTGCGCAGC
TATCTCAAGC AGGAAGCCGT GCTCAGCGCC CGCGTCGTGG CTGGCAAGGA AGAAGAAGGC
GCCAAGTTCC GCGACTACTT CGCTCATGAC GAGCTGCTGC GCACGGCGCC ATCGCACCGT
GCCCTGGCGA TCTTCCGCGG GCGCAACGAA GGCGTGTTGA GCGTCTCGCT GAAGGTCGGC
GAAGAACTGC CCGGCACCCT GCACCCGTGC GAACTGATGA TCGGCAACCA CGTCGGCATC
GAAAACCGCA GCCGACCCGC CGACAAGTGG CTGGGAGAAG TGGTGCGCTG GACCTGGAAG
GTCAAGCTGT ACACCCACCT GGAAACCGAC CTGTTCGGCG AGCTGCGTGA CAATGCCGAA
GGCGAGGCGA TCAACGTGTT CGCCCACAAC CTGCACGATC TGCTGCTGGC CGCCCCGGCC
GGTCCGCGCG CCACCCTGGG CTTCGACCCA GGCCTGCGTA CGGGCTGCAA GATCGCCGTG
GTCGACGCAA CCGGCAAACT GCTGGACCAC ACCACGGTCT ACCCGCACGC GCCGAAGAAC
GACTGGGACC GCACCATTTC CATCATGGCC GCACTGTGCG CCAAACACTC GGTGGAGCTG
ATCGCCATCG GCAACGGTAC CGCCAGCCGC GAAAGCGACA AGCTGGTGGC CGAGCTGGTC
AAGAAATATC CAGCCCTGAA AATCACCAAG ATCATGGTCT CCGAAGCCGG TGCTTCGGTG
TACTCGGCAT CGGAACTGGC CGCCCGCGAG TTCCCGGACC TGGACGTGTC GATCCGCGGC
GCCGTGTCGA TCGCCCGCCG CCTGCAGGAT CCGCTGGCCG AACTGGTGAA GATCGATCCG
AAATCAATCG GTGTCGGCCA GTACCAGCAC GACGTGTCCC AGCTGAAACT GGCACGTGGC
CTGGACGCGG TGGTCGAGGA CTGTGTGAAC GCCGTGGGCG TGGACGTGAA CACCGCTTCG
GTGGCGCTGC TGACGCGCAT CTCCGGCCTC AATGCCACGC TGGCACAGAA CATCGTCGCC
CACCGCGATG CCAATGGTCC GTTTGCCACC CGTGCAGCGC TGAAAAAGGT TAGCCGCCTG
GGTGAGAAAA CCTTCGAGCA GGCCGCCGGC TTCCTGCGTG TGATGAACGG CGACAACCCG
CTGGACGCCT CTGCGGTGCA CCCTGAGGCT TACCCGCTGG TGCAGCGCAT TGCTGCCGAT
ACCGACCGCG ACATCCGCTC GCTGATTGGT GACAGCAGCT TCCTCAAGCG CCTGGACCCG
AAAAAGTTCA CCGACGAAAC CTTCGGCCTG CCAACTGTCA CCGACATCCT GCAAGAGCTG
GACAAGCCCG GCCGCGACCC GCGTCCGGAG TTCAAGACCG CCACCTTCCA GGACGGCGTC
GAAGACCTCA AGGACCTGGA ACCGGGCATG ATCCTCGAAG GCGTGGTGAC CAACGTTACC
AACTTCGGTG CCTTCGTCGA CATCGGCGTG CACCAGGACG GCCTGGTGCA TATCTCGGCG
CTGTCGGAGA AGTTCGTCAA AGACCCGCGT GAAGCGGTCA AGGCCGGCGA TGTGGTCAAG
GTCAAGGTCA TGGAAGTGGA CATCCCGCGC AAACGCGTCG GCCTGTCCAT GCGCATGAGC
GACACCCCGG GCGAGAAGGT CGAAGGCAAC CGCGGTGGTA ACCGCGGCAA TGGTGGCAGC
CGCCAGCAGC AGGCACCGCG CCAGCGTGAA ACCGCCACGG CTGCGCCGGC CAACAACGCC
ATGGCCTCGC TGTTCGCCAA CGCCAAGCAA TTGAAGAAGA AGTAA
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| Protein sequence | MDSINSRIAE ELGVRPQQVE AAVSLLDEGS TVPFIARYRK EVTGSLDDTQ LRHLEERLRY
LRELDERRAS ILSSIEEQGK LTPELAREIK LADTKTRLED LYLPYKQKRR TKGQIALEAG
LGELADGLFN DPTLAPESEA ARFVNVEKGV ADVKAALEGA KYILMERFAE DAALLDKLRS
YLKQEAVLSA RVVAGKEEEG AKFRDYFAHD ELLRTAPSHR ALAIFRGRNE GVLSVSLKVG
EELPGTLHPC ELMIGNHVGI ENRSRPADKW LGEVVRWTWK VKLYTHLETD LFGELRDNAE
GEAINVFAHN LHDLLLAAPA GPRATLGFDP GLRTGCKIAV VDATGKLLDH TTVYPHAPKN
DWDRTISIMA ALCAKHSVEL IAIGNGTASR ESDKLVAELV KKYPALKITK IMVSEAGASV
YSASELAARE FPDLDVSIRG AVSIARRLQD PLAELVKIDP KSIGVGQYQH DVSQLKLARG
LDAVVEDCVN AVGVDVNTAS VALLTRISGL NATLAQNIVA HRDANGPFAT RAALKKVSRL
GEKTFEQAAG FLRVMNGDNP LDASAVHPEA YPLVQRIAAD TDRDIRSLIG DSSFLKRLDP
KKFTDETFGL PTVTDILQEL DKPGRDPRPE FKTATFQDGV EDLKDLEPGM ILEGVVTNVT
NFGAFVDIGV HQDGLVHISA LSEKFVKDPR EAVKAGDVVK VKVMEVDIPR KRVGLSMRMS
DTPGEKVEGN RGGNRGNGGS RQQQAPRQRE TATAAPANNA MASLFANAKQ LKKK
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