Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0252 |
Symbol | |
ID | 5192671 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 294908 |
End bp | 295873 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640584697 |
Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
Protein accession | YP_001265610 |
Protein GI | 148545508 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0269114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.27021 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCACAG TCTTCTTGCG TCGTGGTCTG GTCGCCCTGT TTGCGGCGGC TGTGTCCTTC GGCGCCATTA CCCAAGCCCA GGCCGAGAGC CTGCGTATCG GTTACCAGAA ATACGGCACC TTGGTGCTGC TCAAGGCCAA GGGCACGCTG GAGAAGCGTC TGGCCGAGCA GGGAGTACAG GTGCAATGGA CCGAATTCCC CGGCGGCCCG CAGCTGCTTG AAGGGCTGAA CGTCGGCTCC ATCGATTTCG GCGTAACCGG CGAGACGCCT CCTGTGTTCG CTCAGGCCGC TGGCGCCGAC CTGCTCTACG TGGCCTACGA GCCGCCAGCG CCGCACAGCG AAGCGATCCT GGTGCCCAAG GGCTCGCCGA TCCAGTCGGT GAAGGACCTC AAGGGTAAAA AGGTCGTCCT CAACAAAGGC TCCAACGTGC ACTACCTGCT GGTCCGCGCC CTGGAAGACG CCGGCCTCAA GTACAGCGAC ATCCAGCCTG TCTACCTGCC GCCAGCCGAC GCCCGCGCCG CCTTCGAGCG CGGCAGCGTG GATGCCTGGG TGATCTGGGA CCCTTACCAG GCCGCCGCCG AGCAGCAGCT GCAAGCGCGC ACCCTGCGTG ACGGCAAGGG CCTGGTCGAC AACCACCAGT TCTACCTCGC CACCCGCAAC TATGCGACAC AGCACCCAGC GGTGATCAAC ACCGTGATCG AGGAAGTGCG CGCCGTGGGT GAATGGTCCC AGGCCAACCC GCAGGAGGTG ACCGACCAGG TTGCCCCGCT GCTCGGCCTG CCTGCCGGCA TCACCCTGAC CTCTGTCAAA CGCCAAGGCT ACGGCGCTGC GCCGCTGACC CCAGAGGTGG TGGCCGCGCA ACAGAAGATC GCCGACACCT TCCAGGCGCT CAAGCTGATA CCCAAGCCGC TGAGCATCAA GGACGTGATC TGGACACCCC CTGCCAAAGT CGCTAGCGCG CCTTGA
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Protein sequence | MRTVFLRRGL VALFAAAVSF GAITQAQAES LRIGYQKYGT LVLLKAKGTL EKRLAEQGVQ VQWTEFPGGP QLLEGLNVGS IDFGVTGETP PVFAQAAGAD LLYVAYEPPA PHSEAILVPK GSPIQSVKDL KGKKVVLNKG SNVHYLLVRA LEDAGLKYSD IQPVYLPPAD ARAAFERGSV DAWVIWDPYQ AAAEQQLQAR TLRDGKGLVD NHQFYLATRN YATQHPAVIN TVIEEVRAVG EWSQANPQEV TDQVAPLLGL PAGITLTSVK RQGYGAAPLT PEVVAAQQKI ADTFQALKLI PKPLSIKDVI WTPPAKVASA P
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