| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0228 |
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| Symbol | gabD |
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| ID | 5195128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 266409 |
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| End bp | 267851 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640584673 |
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| Product | succinate-semialdehyde dehydrogenase I |
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| Protein accession | YP_001265586 |
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| Protein GI | 148545484 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.927727 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTCA AAGACGCTCA GTTGTTCCGC CAGCAAGCCT ATATCAATGG TGAGTGGCTG
GATGCGGACA ACGGCCAGAC CATCAAGGTG ACCAACCCGG CCACCGGCGA AGTCATCGGT
ACCGTGCCGA AGATGGGCAC CGCGGAAACT CGCCGTGCTA TCGAAGCCGC CGACAAGGCC
CTGCCGGCCT GGCGTGCCCT GACTGCGAAA GAGCGCTCGG CCAAGCTGCG TCGCTGGTTC
GAACTGATGA TCGAGAACCA GGACGACCTG GCTCGCTTGA TGACCACCGA ACAGGGCAAG
CCACTGGCCG AAGCCAAGGG CGAAATCGCC TACGCGGCCT CGTTCATCGA GTGGTTCGCC
GAAGAAGCCA AGCGCATCTA CGGTGACACC ATCCCAGGCC ACCAGCCAGA CAAGCGCCTG
ATTGTCATCA AGCAGCCAAT CGGCGTTACC GCGGCCATCA CCCCGTGGAA CTTCCCGGCC
GCCATGATCA CCCGTAAAGC CGGCCCGGCC CTGGCCGCTG GCTGCACCAT GGTCCTCAAG
CCGGCTTCGC AAACCCCATA CTCCGCTCTG GCCCTGGTCG AGCTGGCCCA CCGTGCCGGC
ATCCCGGCTG GCGTGCTGAG TGTGGTGACC GGCAGCGCCG GCGAAGTTGG CGGCGAACTG
ACCGGCAACT CCCTGGTACG CAAGCTGTCC TTCACCGGCT CGACCGAAAT CGGTCGCCAG
CTGATGGAAG AATGCGCCAA GGACATCAAG AAGGTTTCCC TGGAGCTGGG TGGCAACGCC
CCGTTCATCG TGTTCGACGA CGCCGACCTG GACAAGGCGG TCGAGGGCGC GATCATCTCC
AAGTACCGTA ACAACGGCCA GACCTGCGTC TGCGCCAACC GTATCTACGT GCAGGACGGC
GTCTACGACG CGTTCGCCCA GAAGCTGGCC GCTGCAGTTG CCAAGCTGAA GATCGGTAAC
GGCCTGGAAG AAGGCACCAC CACTGGCCCG CTGATCGACG GCAAGGCTGT CGCCAAGGTC
CAGGAGCACA TCGAGGACGC CGTCAGCAAA GGCGCCAAAG TGCTGTCCGG TGGCAAGCTG
ATCGAAGGCA ACTTCTTCGA GCCGACCATC CTGGTTGACG TACCGAAGAC CGCTGCTGTC
GCCAAGGAAG AGACGTTCGG CCCACTGGCG CCGCTGTTCC GCTTCAAAGA CGAAGCCGAA
GTCATCGCCA TGTCCAACGA CACCGAGTTC GGCTTGGCCT CGTACTTCTA CGCCCGTGAC
ATGAGCCGTG TGTTCCGTGT CGCCGAAGCC CTGGAGTACG GCATGGTGGG TATCAACACC
GGCCTTATCT CCAACGAAGT GGCGCCGTTC GGTGGTATCA AGGCTTCGGG CCTGGGCCGC
GAAGGTTCCA AGTACGGTAT CGAGGACTAC CTCGAAATCA AATACCTGTG CATCAGCGTC
TGA
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| Protein sequence | MQLKDAQLFR QQAYINGEWL DADNGQTIKV TNPATGEVIG TVPKMGTAET RRAIEAADKA
LPAWRALTAK ERSAKLRRWF ELMIENQDDL ARLMTTEQGK PLAEAKGEIA YAASFIEWFA
EEAKRIYGDT IPGHQPDKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK
PASQTPYSAL ALVELAHRAG IPAGVLSVVT GSAGEVGGEL TGNSLVRKLS FTGSTEIGRQ
LMEECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAIIS KYRNNGQTCV CANRIYVQDG
VYDAFAQKLA AAVAKLKIGN GLEEGTTTGP LIDGKAVAKV QEHIEDAVSK GAKVLSGGKL
IEGNFFEPTI LVDVPKTAAV AKEETFGPLA PLFRFKDEAE VIAMSNDTEF GLASYFYARD
MSRVFRVAEA LEYGMVGINT GLISNEVAPF GGIKASGLGR EGSKYGIEDY LEIKYLCISV
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