| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0179 |
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| Symbol | |
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| ID | 5194240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 190384 |
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| End bp | 192870 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640584624 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001265538 |
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| Protein GI | 148545436 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.267617 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTACCA ACCCGGTGTT AACCCACACT TTCATCCCGA ATGATATTCG TCCAGTCCTG
CAATCAGCTC ACTTGCGCCA CGCCATCCGG GCTGTTCTGT TTGGTACCGC CCTGGGCCTG
GCAACTGCTC CGCAACTTTC CGTAGCGGCC GACACAGCCG AAGTGAGCCA TGACTATGCA
ATACCGGCTG GCCAACTGAC CGATGTGCTC AACAAGATCG CTCGTCAGGC CGGCATCACC
CTATCGAGCA CGCCTCAGCT GACCGATGGC CTGCATTCCA ACGGACTGCA GGGGAAGTTC
ACTACCGATC AAGCGCTGCG CCAGTTGCTA AATGGCAGCG GACTGGAAGC CGTCAGCCAG
GGGGGACGTA ACTATGTGCT GCAGGCACAG CGTCAGAGCG CCGCCCTGGC ATTGCCAGAC
ACCGACATCC GTAGTTTCTC CCTCGGCAAC GCACTGGGCA GCATGGAGGG TTACAACGCC
ACGCACAGCC AGGTGGCGAC CAAGACCAGC ATGCCCTTGG TGGAGACATC CCAATCGGTC
TCGGTAGTCA CTCGCCAACA AATGGACGAT CAGGGCTCTC AGACCGTTGC CCAGGCCATG
CGCTACACGC CTGGAGTACT GACCAACCCG TACGGTGCCA CTCATCGCTA TGACTATGTA
GCCATGCGCG GCTTCAACGA CGGTTCGGTG GACAACATCT ACGTCGATGG GCTCAAGTCA
ATGGGCGACA ACGGCACCTA CAGCACGATG CAGGTAGACC CATACTTTCT TGAGCGCATC
GACATTCTCA AGGGACCGTC TTCGGTACTG TACGGGCGAA GCTCGCCGGG TGGCCTGGTA
GCCCTGACCA CCAAGAAGCC ACTCTTTGCC CCTTACCATC AGGTTCAGGC CACGGTAGGT
ACTCAGGGCC AGCGTGGCGT GGGCTTCGAC TTCAGTGGTC CTGTGGATGA CGACAAACGC
ATTGCGTATC GCCTGACGGG TTTGGCGGAT GCTTCCGACA CTCAGTTCGA CCACAACAAG
GAAGAACGTT ACGCCATCGC CCCCGCTATC AGTGTCGACT TCACCGAAGA CACCTCACTC
ACGCTGCAGG CCTATTTGCA GCACGACCCT GACGGTGGGT ACCACGGCGG TAACCCTGCT
GATGGCATGC TGCACAAGCG CAACGGTTTG CGCCTGTCAG ACCATTTCTT CGAAGGCGAG
CCGAGCATCG ACAACTACGA GCGCACGCAG CAATCCTTCA GCTACCAGTT TGAGCATCGC
TTCAATGATG TGTTCACAGC GCGGCAGAAC TTCCGTTATC AGGATTCCGA CGTGTCGATG
GACCAGGTGT ACTCCGCCGG CTGGGCAGAT GTTGACAGCA ACAAGTTAAA TCGCGCCTAT
ACCGGCGGCG ACGAGCGTCT GCATTCGTAC ATCATTGATA ACATGCTGCA GGCAGAATTC
TTTACCGGGG CGGCCAAACA CACCTTGCTA CTGGGGGCTG ACTACCAGCG GCGCAAAGCC
GACGTGGCAT GGCGTTATGG CACCGTCGGC CCACTGGATG CCGGCAATCC ACAGTACGGC
AATGGCAATC TTCAGGTACT GGGCGAGAAC CGCTACCAGC GACGCTTGCA ACAAACGGGT
GTGTACCTGC AGGATCTGGT GGAGCTGGAC CAGTGGCGCT TTTCCTTGGG ACTGCGCCAG
GACTGGGTGA AGGTGTCCGA AGAGAACCGT GACAGCGACA GCAAGGTCAG TGATCAACGC
TCCAGGTTCA CCTCCCGGGC AGGGGTGCTC TACCTTTTCG AGAACGGCAT TGCGCCCTAC
ATCAGCTACT CGGAGTCGTT CAACCCGAAC ACCGTGTCCG ACCAGCAGGG CCGGCCGCTG
GCACCTACGG AGGGCACTCA GTGGGAAGCC GGCATCAAAT ATCAGCCACC AGGGAGCGAC
AACCTGTTCA CCGCATCGGT GTTCCGCATC GAGCAGGAGA ATTTGGCGTC TAAACAGCCT
GACGAAGACT TCTATCGCCC TGTCGGTGAA GTCCGCTCGC AAGGGCTAGA GCTTGAGGCC
CATGTACAGC TGACCGATAG CCTCAAACTG CTGAGTGGCT ATACCTTCAC CGATATCGAG
TATTCGAAGT CAATGCCGAG CCTTGTCTCG GGCAACTTGG ACAACAAGGG TAATTCGCCG
ACTCAGGCGC CGAAACAGAT GCTTTCGCTG TGGGCCGACT ATAACTTCCG CCAGGGGGCA
CTGGATGGCC TGCGGCTGGG CGGTGGGGTG CGATATGTGG GGTACAGCTG GGTGGATGCG
GAAAACAGCA TGACAGTGCC TTCCTACACC CTGTTCGACG CCTCTATCGG CTATGACTTG
GGCAAGGTCG GCCTGGCGGG TGTGGATGTT CGCTTGAACG CCAACAACCT TACCAATGAA
AACTACATCA CCTCATGTGC CAGCCTGAAC TACTGCTACA TGGGTGAAGA GCGCAATGTG
AGCGCCACAG TCAGCTATCA GTTCTAA
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| Protein sequence | MPTNPVLTHT FIPNDIRPVL QSAHLRHAIR AVLFGTALGL ATAPQLSVAA DTAEVSHDYA
IPAGQLTDVL NKIARQAGIT LSSTPQLTDG LHSNGLQGKF TTDQALRQLL NGSGLEAVSQ
GGRNYVLQAQ RQSAALALPD TDIRSFSLGN ALGSMEGYNA THSQVATKTS MPLVETSQSV
SVVTRQQMDD QGSQTVAQAM RYTPGVLTNP YGATHRYDYV AMRGFNDGSV DNIYVDGLKS
MGDNGTYSTM QVDPYFLERI DILKGPSSVL YGRSSPGGLV ALTTKKPLFA PYHQVQATVG
TQGQRGVGFD FSGPVDDDKR IAYRLTGLAD ASDTQFDHNK EERYAIAPAI SVDFTEDTSL
TLQAYLQHDP DGGYHGGNPA DGMLHKRNGL RLSDHFFEGE PSIDNYERTQ QSFSYQFEHR
FNDVFTARQN FRYQDSDVSM DQVYSAGWAD VDSNKLNRAY TGGDERLHSY IIDNMLQAEF
FTGAAKHTLL LGADYQRRKA DVAWRYGTVG PLDAGNPQYG NGNLQVLGEN RYQRRLQQTG
VYLQDLVELD QWRFSLGLRQ DWVKVSEENR DSDSKVSDQR SRFTSRAGVL YLFENGIAPY
ISYSESFNPN TVSDQQGRPL APTEGTQWEA GIKYQPPGSD NLFTASVFRI EQENLASKQP
DEDFYRPVGE VRSQGLELEA HVQLTDSLKL LSGYTFTDIE YSKSMPSLVS GNLDNKGNSP
TQAPKQMLSL WADYNFRQGA LDGLRLGGGV RYVGYSWVDA ENSMTVPSYT LFDASIGYDL
GKVGLAGVDV RLNANNLTNE NYITSCASLN YCYMGEERNV SATVSYQF
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